PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan019948

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

MYB_related

Protein Properties

Length: 243aa MW: 26590.3 Da PI: 7.6622

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-4869	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.8	2.8e-14	115	159	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Aan019948 115 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 159 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	7.2	3	57	IPR001005	SANT/Myb domain
CDD	cd00167	1.44E-4	29	55	No hit	No description
PROSITE profile	PS50090	4.333	32	55	IPR017877	Myb-like domain
PROSITE profile	PS51294	18.267	108	164	IPR017930	Myb domain
SuperFamily	SSF46689	6.65E-17	110	165	IPR009057	Homeodomain-like
SMART	SM00717	5.0E-12	112	162	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	7.1E-18	112	162	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.2E-11	113	158	IPR009057	Homeodomain-like
CDD	cd00167	6.05E-11	115	160	No hit	No description
Pfam	PF00249	3.1E-12	115	159	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MADKKAYGLE SRIGLSRMPC IAHFEEDSKD CWDKIAIDVP GKTAEEVKHH YELLVDDLDR 60 IESGIVPLAC YTASSDDSGS HGGDDGTSKK SGNLRYHSSE GKASKADQER RKGVAWTEDE 120 HRLFLLGLEK YGKGDWRSIS RNFVVTRTPT QVASHAQKYF IRLNSINNKD RRRSSIHDIT 180 SVNNGDVSVP QPPTNDSPGK STKQQPIYGG QPVVGTPVNL APGFSVGTPV GVPPNIDPRV 240 SSX

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269\|PubMed:26243618}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021986305.1	1e-105	transcription factor SRM1-like
Swissprot	Q9FNN6	9e-83	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A2U1NKD9	1e-124	A0A2U1NKD9_ARTAN; Duplicated homeodomain-like superfamily protein
STRING	EMJ24454	4e-94	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-78	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]