PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan019954

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

MYB_related

Protein Properties

Length: 158aa MW: 17689.8 Da PI: 10.5553

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55015755	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-312160995	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.7	5.3e-13	81	125	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + ++ G+g+W+ I+r + k+Rt+ + s+ qky Aan019954 81 PWTEDEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTKVASHAQKY 125 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.289	74	130	IPR017930	Myb domain
SuperFamily	SSF46689	6.13E-16	76	131	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.2E-17	77	128	IPR006447	Myb domain, plants
SMART	SM00717	2.0E-8	78	128	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-10	80	125	IPR009057	Homeodomain-like
CDD	cd00167	1.15E-8	81	126	No hit	No description
Pfam	PF00249	3.4E-10	81	125	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MSSCDGGSNE IMLFGVRVKI DPMRKSVSMN NLSQYEQPAP LLANDGSKAD VVVSADNGYA 60 SADDVVRHQA NGGRERKRGV PWTEDEHKLF LLGLQKVGKG DWRGISRNFV KTRTPTKVAS 120 HAQKYFLRRS NLNRRRCRSS LFDMTTDSVA PMPIDTRX

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023730192.1	2e-70	transcription factor MYB1R1-like
Swissprot	Q2V9B0	2e-66	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A2U1N872	1e-109	A0A2U1N872_ARTAN; Homeodomain-like protein
STRING	XP_009802855.1	3e-68	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	4e-57	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]