PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan020056

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

GRAS

Protein Properties

Length: 510aa MW: 58337.4 Da PI: 7.7057

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41951572	PU_unref	Unigene	View CDS
gnl\|UG\|Aan#S41951573	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-44363	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	349.7	4.6e-107	140	507	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 + L++cA+av+sgd + a + L++++++as +gdp qRla++f+++++arla+++s+ly+ + + s ++e+l+a++++ ++P+ k++ aN+ I Aan020056 140 TMLVNCAQAVASGDRRTAYEHLNQIRQHASTSGDPSQRLAHVFVRGMEARLAGTGSQLYADNKLLTIS---TAEKLQAYQVYLSACPFKKIAMTFANKLI 236 689******************************************************999888888...89*********************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 + + +++++HiiDf+i++G+QWp +++ L++ p++ p+lRiTg++ p++g +e+leetg+rL +++++++vpfe+n++++++++++++e+L+++++E Aan020056 237 WDGALNSSTLHIIDFGIGYGFQWPIFIRHLSDLPNP-PKLRITGIEYPQPGfrPAERLEETGRRLGSYCKRFNVPFEYNAIATQNWDTIKIEDLKLQRNE 335 ****************************9875.9********9**************************999************ PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 laVn++l+ ++llde+v+++s+rd+vLkl+++++P+v+ ++ + ++++ F++rf e+l +ysalfd+++a++ r++e+r + Ere+ gre+ nv+ac Aan020056 336 FLAVNCMLRFQNLLDETVCVDSPRDKVLKLIRDMKPDVFAHTVVNGAYSAPFFVTRFRETLFHYSALFDMFDATIERDNEQRLVFEREFYGREALNVIAC 435 ************************************************************************************************ PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 egaer+er e++++W+ r+++aGFk +l+e+ k+ ++ + +++d + +e+ +++++gWk+r L++ S+W Aan020056 436 EGAERVERPESYKQWQVRMSRAGFKMKSLNEELIKKLRCKMVGYHKD-FVFDEDGKWVFQGWKGRILFASSCW 507 *****************************************77.*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.075	112	489	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-104	140	507	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
VHRGMEEANK FLPTSKPLVI DLDKYDLPQD SRYDPPEVVV KVEKTTPSNG LKGRKHYQSE 60 DRDYEEERSS KQSAVYVEED ELSEMFDRVL LGPYATGGPV SCCNEMPIPA DTKSLQNGPM 120 GGSNNSRNAK KAEKSVDIST MLVNCAQAVA SGDRRTAYEH LNQIRQHAST SGDPSQRLAH 180 VFVRGMEARL AGTGSQLYAD NKLLTISTAE KLQAYQVYLS ACPFKKIAMT FANKLIWDGA 240 LNSSTLHIID FGIGYGFQWP IFIRHLSDLP NPPKLRITGI EYPQPGFRPA ERLEETGRRL 300 GSYCKRFNVP FEYNAIATQN WDTIKIEDLK LQRNEFLAVN CMLRFQNLLD ETVCVDSPRD 360 KVLKLIRDMK PDVFAHTVVN GAYSAPFFVT RFRETLFHYS ALFDMFDATI ERDNEQRLVF 420 EREFYGREAL NVIACEGAER VERPESYKQW QVRMSRAGFK MKSLNEELIK KLRCKMVGYH 480 KDFVFDEDGK WVFQGWKGRI LFASSCWVPV

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

VHRGMEEANK FLPTSKPLVI DLDKYDLPQD SRYDPPEVVV KVEKTTPSNG LKGRKHYQSE  60
DRDYEEERSS KQSAVYVEED ELSEMFDRVL LGPYATGGPV SCCNEMPIPA DTKSLQNGPM  120
GGSNNSRNAK KAEKSVDIST MLVNCAQAVA SGDRRTAYEH LNQIRQHAST SGDPSQRLAH  180
VFVRGMEARL AGTGSQLYAD NKLLTISTAE KLQAYQVYLS ACPFKKIAMT FANKLIWDGA  240
LNSSTLHIID FGIGYGFQWP IFIRHLSDLP NPPKLRITGI EYPQPGFRPA ERLEETGRRL  300
GSYCKRFNVP FEYNAIATQN WDTIKIEDLK LQRNEFLAVN CMLRFQNLLD ETVCVDSPRD  360
KVLKLIRDMK PDVFAHTVVN GAYSAPFFVT RFRETLFHYS ALFDMFDATI ERDNEQRLVF  420
EREFYGREAL NVIACEGAER VERPESYKQW QVRMSRAGFK MKSLNEELIK KLRCKMVGYH  480
KDFVFDEDGK WVFQGWKGRI LFASSCWVPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-43	135	507	1	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024980914.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2U1MZS4	0.0	A0A2U1MZS4_ARTAN; Transcription factor GRAS
STRING	XP_009606498.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]