PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan020118
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GATA
Protein Properties Length: 355aa    MW: 39470.4 Da    PI: 10.1131
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41961172PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-63655PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.4e-17184217134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Aan020118 184 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 217
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.334178214IPR000679Zinc finger, GATA-type
SMARTSM004013.3E-17178229IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-12181226No hitNo description
Gene3DG3DSA:3.30.50.101.9E-14182217IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.48E-13183215No hitNo description
PROSITE patternPS003440184209IPR000679Zinc finger, GATA-type
PfamPF003202.6E-15184217IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MTPIFLNSAS NNYSPYASDH QHHDQDHLNH HQFLISPNSQ TSSSSNSLTT HMFLNSKVYD  60
DQNGIFNREL QAMRPRHEGD NFGSQVYNDH RIENNDEKGA KFPTWNKSGV NNMNDQSQMK  120
WMSSKMRVML KMKKSDPVSL KIFSSNTREV TKLKDHKSPT SPMEETDNSS NSTSSNNNMP  180
IRVCSDCNTT KTPLWRSGPC GPKSLCNACG IRQRKARRAL AAALAQNGDN NVSINKPIVA  240
QLKVKKTLHK DHKKPSNGLV TKLKKRQYTK QIITNTTLVT PSPSVSPSPS PSPSPSPSPS  300
PSPSPSSSSP ARKNCVEEFL VNLSKNLTCY RVFPQDEKEA AILLMALSCG FAHET
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024980176.11e-124putative GATA transcription factor 22
TrEMBLA0A2U1M0M30.0A0A2U1M0M3_ARTAN; Zinc finger, NHR/GATA-type
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-19GATA family protein