PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan020131
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family LBD
Protein Properties Length: 143aa    MW: 15506.4 Da    PI: 5.4994
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55208364PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-29088PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26061.13e-1935944100
     DUF260  44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                 +++++pe++r da++slvyeA++r+rdPvyG++g i++lq+q+++l+ael+++++e
  Aan020131   3 MIIQEVPENQRADAANSLVYEANIRLRDPVYGCMGAISALQHQVQSLQAELNAVRAE 59 
                6899*************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.687160IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-17357IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MVMIIQEVPE NQRADAANSL VYEANIRLRD PVYGCMGAIS ALQHQVQSLQ AELNAVRAEI  60
LRYKYSEPQS DHNSIPSTHH LPLFSTGVVP VTTQALPPPP STTLSPPPPP PPPPPPRASS  120
SSSMYTPPSD YSTITNDNVS YFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-1916752118LOB family transfactor Ramosa2.1
5ly0_B2e-1916752118LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023736121.12e-58LOB domain-containing protein 15
TrEMBLA0A2J6KAE14e-57A0A2J6KAE1_LACSA; Uncharacterized protein
STRINGVIT_13s0067g02380.t013e-44(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.13e-30LOB domain-containing protein 13