PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan020234

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

HD-ZIP

Protein Properties

Length: 246aa MW: 28134.5 Da PI: 6.8939

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55105410	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-157425	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.2	4.5e-21	67	120	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+eqle+Le+ F+++++++ +++ +LA++lgL+ rq+ vWFqNrRa++k Aan020234 67 KKKRLTSEQLEALENTFQEEKKLDPDTKMKLAHELGLQPRQIAVWFQNRRARWK 120 56679************************************************9 PP
2	HD-ZIP_I/II	117.7	6.5e-38	67	158	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kk+rl++eq+++LE++F+ee+kL+p+ K++la+eLglqprq+avWFqnrRAR+k+kqlE y++Lk+++da+++e+++L++ev +Lr+ lke Aan020234 67 KKKRLTSEQLEALENTFQEEKKLDPDTKMKLAHELGLQPRQIAVWFQNRRARWKAKQLECLYDTLKQEFDAVSREKQKLQEEVLALRTILKE 158 9**************************************************************************************88775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.8E-20	51	124	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.058	62	122	IPR001356	Homeobox domain
SMART	SM00389	3.4E-19	65	126	IPR001356	Homeobox domain
CDD	cd00086	1.47E-19	67	123	No hit	No description
Pfam	PF00046	1.6E-18	67	120	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.3E-23	69	128	IPR009057	Homeodomain-like
PRINTS	PR00031	3.4E-5	93	102	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	97	120	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.4E-5	102	118	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.3E-6	122	156	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MDWNGGNPRP FIPRPAAQSS FAFLYNYNND HYVYPPGVGD MKHQMMQAPL AMMEMNQNEY 60 ENNNQDKKKR LTSEQLEALE NTFQEEKKLD PDTKMKLAHE LGLQPRQIAV WFQNRRARWK 120 AKQLECLYDT LKQEFDAVSR EKQKLQEEVL ALRTILKEQV SKRQGAGSST GYTYMSGEET 180 VESTSVATIR TTGNHHHQLT LGQHQAGPAT TNAMVPIDNN YSLNYDPSPS MATPSYSNWA 240 VLPSYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	122	RRARWKAKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022000798.1	1e-156	homeobox-leucine zipper protein ATHB-22-like
Swissprot	Q9LZR0	2e-50	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A2U1L0I8	1e-175	A0A2U1L0I8_ARTAN; Helix-turn-helix motif-containing protein
STRING	XP_008241330.1	6e-75	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	7e-48	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]