PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan020277

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

C3H

Protein Properties

Length: 364aa MW: 39895.6 Da PI: 7.6248

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41962429	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-41268	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34	4.9e-11	34	59	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++++tG C yGd+C+F+H+ Aan020277 34 PGQPDCLYYLKTGMCGYGDTCRFNHP 59 5789*********************8 PP
2	zf-CCCH	35.9	1.3e-11	78	101	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C +f++tGtCkyG++Ck++H+ Aan020277 78 EPDCVYFLKTGTCKYGSSCKYNHP 101 789********************8 PP
3	zf-CCCH	35.3	1.9e-11	123	147	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++CkF+H++ Aan020277 123 QKSCPHYLRTGSCKFGATCKFHHPQ 147 567********************97 PP
4	zf-CCCH	36	1.2e-11	228	252	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++Cr+f+ +GtCkyG++Ck++H++ Aan020277 228 EPECRYFMSGGTCKYGSNCKYHHPK 252 799********************96 PP
5	zf-CCCH	33.8	5.6e-11	273	297	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C++++ +GtCkyG+ Ck+ H+ Aan020277 273 GQTVCSYYSLYGTCKYGSACKYDHP 297 6789********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.582	33	61	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.0E-6	33	60	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-7	35	59	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.41E-6	38	60	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-4	39	58	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.38	75	103	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7E-6	75	102	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-8	78	101	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.05E-5	80	103	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-4	81	100	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.699	120	148	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7E-4	120	147	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.49E-6	120	147	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.2E-9	123	147	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.3E-5	125	146	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.502	225	253	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.1E-6	225	252	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.4E-10	228	252	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.29E-7	229	254	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-5	231	252	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.98E-6	269	297	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.239	271	299	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.3E-7	271	298	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-8	273	297	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.2E-4	276	296	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MPDHRHEHGN IEEAIRRLKI EKDDPGLTGY PDRPGQPDCL YYLKTGMCGY GDTCRFNHPA 60 YNGQDDKHGA DFPERVGEPD CVYFLKTGTC KYGSSCKYNH PHGGRDACPV VLNTIGLPMR 120 QGQKSCPHYL RTGSCKFGAT CKFHHPQVPL DGANTPVSGP MSYAPSHISG VPSWPYMSQQ 180 TYFPMVLPPS GTPYIGNMSP MLSTNGLTPI DHVYPSTPSS PLPERPNEPE CRYFMSGGTC 240 KYGSNCKYHH PKEKTVQSAV SSLSPFGLPL RPGQTVCSYY SLYGTCKYGS ACKYDHPLVV 300 YSYNYSMGLT SLPRVEPLFM SYGGTNSPTT RSADSTSNGK LSTDDSCVEH VGSSSHSSSQ 360 NQSD

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MPDHRHEHGN IEEAIRRLKI EKDDPGLTGY PDRPGQPDCL YYLKTGMCGY GDTCRFNHPA  60
YNGQDDKHGA DFPERVGEPD CVYFLKTGTC KYGSSCKYNH PHGGRDACPV VLNTIGLPMR  120
QGQKSCPHYL RTGSCKFGAT CKFHHPQVPL DGANTPVSGP MSYAPSHISG VPSWPYMSQQ  180
TYFPMVLPPS GTPYIGNMSP MLSTNGLTPI DHVYPSTPSS PLPERPNEPE CRYFMSGGTC  240
KYGSNCKYHH PKEKTVQSAV SSLSPFGLPL RPGQTVCSYY SLYGTCKYGS ACKYDHPLVV  300
YSYNYSMGLT SLPRVEPLFM SYGGTNSPTT RSADSTSNGK LSTDDSCVEH VGSSSHSSSQ  360
NQSD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Aan.11138	0.0	trichome

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024967878.1	1e-163	zinc finger CCCH domain-containing protein 3-like
TrEMBL	A0A2U1MU26	0.0	A0A2U1MU26_ARTAN; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRING	VIT_12s0059g01450.t01	1e-114	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-84	C3H family protein