PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan020328
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family bHLH
Protein Properties Length: 325aa    MW: 36020.5 Da    PI: 7.2
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-44988PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-13186232455
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Aan020328 186 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITDLQ 232
                799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.3E-171080IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.085182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-19185246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.18E-14185236No hitNo description
PfamPF000101.0E-10186232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-17186243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-16188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
XECVFDKPSS PSQSFNTSRS VWASDAKSCE EHYHSRSFLA KLARVQTLVL VPVKRGVLEI  60
GSFKSIPEDQ TFVSTVKTLF NGYHPPKVLP KIFGQELSLG AKSAPKSGPI SISFSPKVED  120
DMEFGSESYE IQPSFGGNSS NGNQSMVLNS QALVSGLDQS NQDLLTDRKP RKRGRKPANG  180
REEPLNHVEA ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAISYITD LQSKIRILEA  240
EKEVTGAPEV DFMARKDDAV LRVSCPLDEH PVARVIKTFR EHQIVTQDTN VTVEDGKVIH  300
TFSFQGLAGG AAEELKEKLD TVLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-30180242264Transcription factor MYC2
5gnj_B3e-30180242264Transcription factor MYC2
5gnj_E3e-30180242264Transcription factor MYC2
5gnj_F3e-30180242264Transcription factor MYC2
5gnj_G3e-30180242264Transcription factor MYC2
5gnj_I3e-30180242264Transcription factor MYC2
5gnj_M3e-30180242264Transcription factor MYC2
5gnj_N3e-30180242264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167175RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024981837.10.0transcription factor bHLH3
SwissprotA0A3Q7H2161e-135MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A2U1N1P30.0A0A2U1N1P3_ARTAN; Myc-type, basic helix-loop-helix (BHLH) domain-containing protein
STRINGPGSC0003DMT4000516721e-138(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-106bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]