PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan020570

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

Protein Properties

Length: 238aa MW: 27074.9 Da PI: 8.9722

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41944658	PU_unref	Unigene	View CDS
gnl\|UG\|Aan#S55083717	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-22863	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.4	1.5e-14	131	220	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k ++s+v++ +l lp f++++ +++ +tl de+g + + + ++ + l++GWk+F +++L +gD +vF+l++r+ f +v ++r Aan020570 131 FVKPILQSHVTA--CLNLPSYFCRKNLP--NNGAIVTLIDEEGDEVPTVY--SAYKHNFALGGGWKGFSISHELVDGDALVFQLIERTVF--KVYIIR 220 677887888775..49********53..35678***********..999999*************************99999..666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.8E-21	125	221	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.28E-22	125	222	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.37E-21	129	220	No hit	No description
Pfam	PF02362	3.0E-11	131	220	IPR003340	B3 DNA binding domain
SMART	SM01019	3.1E-17	131	222	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.264	144	222	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MVMSKENYED LRKKQLEENK RKMKELNLPL LALTLKTPHS PKPSPMKHAK PRVLGTEIVE 60 VRRSSRVASL PAPDHKEIVV YERVTILESG RKYSYLRKRL GNRDASDEAR YWATTKAEEL 120 EASLEGGYPS FVKPILQSHV TACLNLPSYF CRKNLPNNGA IVTLIDEEGD EVPTVYSAYK 180 HNFALGGGWK GFSISHELVD GDALVFQLIE RTVFKVYIIR CKGYEEGVNN EALELKFX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022014085.1	1e-110	B3 domain-containing protein Os06g0194400-like
Refseq	XP_022014089.1	1e-110	B3 domain-containing protein Os06g0194400-like
Swissprot	Q69V36	2e-54	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A2U1LVC4	1e-124	A0A2U1LVC4_ARTAN; B3 domain-containing protein
STRING	XP_009367366.1	6e-74	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-48	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]