PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan020631

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

SBP

Protein Properties

Length: 175aa MW: 19457.8 Da PI: 8.5044

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-3330	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	96	3.4e-30	115	174	1	60
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekr 60 +Cqv++C++dls ak+yhrrhkvCevhska ++lv +++qrfCqqCsrfh lsefDe+ r Aan020631 115 MCQVDNCKEDLSAAKDYHRRHKVCEVHSKAGKALVGKQMQRFCQQCSRFHPLSEFDEGXR 174 6********************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.1E-32	108	174	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	23.974	113	175	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.62E-28	114	174	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.4E-23	116	174	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
XTVVDDSRNS WNPKSWEWDS SRLVAKPVDM IEIQKEQQQQ QQQQQHHHQP ATNPANSDLS 60 KRSPVGQREE DGQLSLKLGG GLASVEEPVT RPTKRVRSGS PGNGGGGGGG GNYPMCQVDN 120 CKEDLSAAKD YHRRHKVCEV HSKAGKALVG KQMQRFCQQC SRFHPLSEFD EGXRX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	4e-27	111	170	1	60	squamosa promoter-binding protein-like 12
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in vasculature of aerial parts. Expressed in cotyledons and leaf petioles. {ECO:0000269\|PubMed:15703061}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023772722.1	8e-76	squamosa promoter-binding-like protein 14
Refseq	XP_023772793.1	8e-76	squamosa promoter-binding-like protein 14
Refseq	XP_023772852.1	8e-76	squamosa promoter-binding-like protein 14
Refseq	XP_024969327.1	7e-77	squamosa promoter-binding-like protein 14 isoform X2
Swissprot	Q8RY95	2e-50	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A2U1NWM6	2e-91	A0A2U1NWM6_ARTAN; SBP-like protein
STRING	XP_008373366.1	5e-60	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	7e-50	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]