PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan020678

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

NAC

Protein Properties

Length: 271aa MW: 30782.1 Da PI: 6.1246

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41920118	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-507160997	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	83.3	4.8e-26	6	66	69	129
NAM 69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +tg r+nrat+sgyWkatgkdke+++ g+lvg+kktLvfy grapkgekt+Wvmhe+rle Aan020678 6 TTGMRTNRATESGYWKATGKDKEIFRPVGKLVGMKKTLVFYIGRAPKGEKTNWVMHEFRLE 66 5899******************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	33.982	1	90	IPR003441	NAC domain
Pfam	PF02365	1.2E-12	5	65	IPR003441	NAC domain
SuperFamily	SSF101941	3.79E-30	6	91	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
LFFPFTTGMR TNRATESGYW KATGKDKEIF RPVGKLVGMK KTLVFYIGRA PKGEKTNWVM 60 HEFRLEGKFS YYNMSQPSED EWVVCRVFHK NAVAQRSPVT DHGLNSFVDE LLDSPSQLPP 120 LMEHSAPNND TSFTLNPSYF SHDQREIHQR EDHKDILGST YSYNFDTNTY QAGPYMNEHQ 180 YASNASGSTL NWSNKGHKLE KDNVVGECKV ERYISTPSVS HDTGVSNDMT MTGTSSSTSI 240 LPKHGLRMKD YDPDDDIGPS TFSELDSLLE Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-23	5	96	83	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-23	5	96	83	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-23	5	96	83	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-23	5	96	83	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-23	5	96	86	174	NAC domain-containing protein 19
3swm_B	3e-23	5	96	86	174	NAC domain-containing protein 19
3swm_C	3e-23	5	96	86	174	NAC domain-containing protein 19
3swm_D	3e-23	5	96	86	174	NAC domain-containing protein 19
3swp_A	3e-23	5	96	86	174	NAC domain-containing protein 19
3swp_B	3e-23	5	96	86	174	NAC domain-containing protein 19
3swp_C	3e-23	5	96	86	174	NAC domain-containing protein 19
3swp_D	3e-23	5	96	86	174	NAC domain-containing protein 19
4dul_A	3e-23	5	96	83	171	NAC domain-containing protein 19
4dul_B	3e-23	5	96	83	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Aan.19897	0.0	trichome

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024983086.1	1e-107	NAC domain-containing protein 92-like
Swissprot	Q9FK44	5e-53	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A2U1PD23	0.0	A0A2U1PD23_ARTAN; No apical meristem (NAM) protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	1e-54	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]