PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan020854
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MIKC_MADS
Protein Properties Length: 182aa    MW: 20982.9 Da    PI: 7.5065
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S56467824PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-60768PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF762.9e-24959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krie++  r+v+fskRrng++KKA+EL vLCd++v   +fs t++lyeys+
  Aan020854  9 KRIEDNGSRHVSFSKRRNGLMKKAHELAVLCDVDVGCFVFSGTNRLYEYST 59
               79***********************************************96 PP
2K-box19.44.3e-0881170998
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                +  +  e+l  e++ +    e  +  qR+l   ++++ +  eL qLe+q++  l+ +R+   el+l  ++ lq+k+++l++e++ L+++l
  Aan020854  81 VRRTVREKLASEHRDVCTADELTEMVQRQLEDHKVQQSDTTELWQLEKQIQPVLQLVRTSTVELMLGAVKALQEKKNQLSKEKQVLEREL 170
                56666677777777777776777789999********************************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.483161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.09E-28282IPR002100Transcription factor, MADS-box
CDDcd002651.84E-34280No hitNo description
PRINTSPR004042.7E-24323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGRGKVELKR IEDNGSRHVS FSKRRNGLMK KAHELAVLCD VDVGCFVFSG TNRLYEYSTG  60
ESSMVKILTR YQEYKNTDEI VRRTVREKLA SEHRDVCTAD ELTEMVQRQL EDHKVQQSDT  120
TELWQLEKQI QPVLQLVRTS TVELMLGAVK ALQEKKNQLS KEKQVLEREL LAARLNESDV  180
DG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-20179177MEF2C
5f28_B7e-20179177MEF2C
5f28_C7e-20179177MEF2C
5f28_D7e-20179177MEF2C
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.95720.0trichome
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023740833.13e-72truncated transcription factor CAULIFLOWER A-like
TrEMBLA0A2U1PZH32e-87A0A2U1PZH3_ARTAN; AGAMOUS-like 31
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.22e-37AGAMOUS-like 31