PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan020940

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

HD-ZIP

Protein Properties

Length: 275aa MW: 30533.4 Da PI: 8.5041

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-28333	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.7e-18	98	152	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Aan020940 98 RKKLRLSKDQAAVLEETFKEHNTLNPKQKLALAKQLDLRPRQVEVWFQNRRARTK 152 788899***********************************************98 PP
2	HD-ZIP_I/II	128.2	3.6e-41	98	187	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +l Aan020940 98 RKKLRLSKDQAAVLEETFKEHNTLNPKQKLALAKQLDLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDTLTEENRRLQKEVNELR-AL 187 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	1.8E-14	23	70	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	6.9E-19	76	152	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.13E-18	89	155	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.038	94	154	IPR001356	Homeobox domain
SMART	SM00389	5.1E-15	96	158	IPR001356	Homeobox domain
CDD	cd00086	2.03E-14	98	155	No hit	No description
Pfam	PF00046	5.5E-16	98	152	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	129	152	IPR017970	Homeobox, conserved site
SMART	SM00340	1.5E-26	154	197	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.4E-11	154	188	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
PLNLMPRHHK LPFVINHHAT DLNMARGIDV NRPPSVSAVM ALTAEREDDA LVSSPNSTVS 60 SVSGKRIERE ENEAERESSS HGDGGDDDDD GGDAAAARKK LRLSKDQAAV LEETFKEHNT 120 LNPKQKLALA KQLDLRPRQV EVWFQNRRAR TKLKQTEVDC EYLKRCCDTL TEENRRLQKE 180 VNELRALKLS PQFYMNMNPP TTLTMCPQCE RVAVSSSSSS STAAATSSVV GSTGLPKGLQ 240 GSMTPNAQKQ THPFLPRASI IPNRPIDGHQ VHPRW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	154	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024996983.1	1e-133	homeobox-leucine zipper protein HAT4
Swissprot	P46602	8e-86	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	A0A2U1P325	0.0	A0A2U1P325_ARTAN; HD-ZIP protein
STRING	XP_009342095.1	1e-94	(Pyrus x bretschneideri)
STRING	XP_009350888.1	1e-94	(Pyrus x bretschneideri)
STRING	XP_004147222.1	5e-95	(Cucumis sativus)
STRING	XP_004167415.1	5e-95	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44910.1	1e-61	homeobox-leucine zipper protein 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]