PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan020977

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

NF-YA

Protein Properties

Length: 235aa MW: 25918.8 Da PI: 10.0667

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-103213	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	106	3.2e-33	144	200	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekk+ ksrkpylheSRh+hA++R+Rg+gGrF Aan020977 144 EEPVYVNAKQYNGILRRRQSRAKAELEKKV-VKSRKPYLHESRHQHAMKRARGCGGRF 200 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.7E-38	142	203	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.748	143	203	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.1E-29	145	200	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.9E-23	146	168	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	148	168	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.9E-23	177	200	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MPTKPLDGDR HSEAEAQTIS PSGVYSQPWW HGIGSGVMSS FGETNGVIKV GAQLQTTSDG 60 VGEDTDSSTA PQSGFKGNNG QEHQQPKQVE TNSPMELLGH SIVLTSNPYQ DPHYAGMMTY 120 GTRAHQHLLG IHQSRMALPL QMEEEPVYVN AKQYNGILRR RQSRAKAELE KKVVKSRKPY 180 LHESRHQHAM KRARGCGGRF LNTKKMDSDK TTNSTQQKGP KSGLAISIKS FNSTX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-22	144	208	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024987591.1	1e-132	nuclear transcription factor Y subunit A-1-like isoform X2
Refseq	XP_024987592.1	1e-133	nuclear transcription factor Y subunit A-4-like isoform X3
Swissprot	Q9LXV5	5e-48	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A2U1KMV8	1e-171	A0A2U1KMV8_ARTAN; CCAAT-binding factor, conserved site-containing protein
STRING	VIT_13s0064g00860.t01	2e-77	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	8e-51	nuclear factor Y, subunit A1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]