PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan021009

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

MYB

Protein Properties

Length: 226aa MW: 26048.2 Da PI: 7.0163

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-511160991	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.3e-18	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++ +G g+W++ ++ g+ R++k+c++rw +yl Aan021009 11 KGAWTPEEDQILIDYIQAHGHGSWRALPKLAGLQRCGKSCRLRWTNYL 58 79********************************************97 PP
2	Myb_DNA-binding	55.8	1.1e-17	64	109	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++++++++ lG++ W+tIa +++ gRt++++k++w++++ Aan021009 64 RGKFSKEEEDIILHLHSVLGNK-WSTIATRLP-GRTDNEIKNYWNTHM 109 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.5E-25	5	61	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.984	6	58	IPR017930	Myb domain
SuperFamily	SSF46689	5.87E-31	8	105	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-13	10	60	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-16	11	58	IPR001005	SANT/Myb domain
CDD	cd00167	4.98E-11	13	58	No hit	No description
PROSITE profile	PS51294	27.511	59	113	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-27	62	113	IPR009057	Homeodomain-like
SMART	SM00717	5.2E-16	63	111	IPR001005	SANT/Myb domain
Pfam	PF00249	9.6E-16	64	108	IPR001005	SANT/Myb domain
CDD	cd00167	2.32E-11	66	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
VNXDENNNLK KGAWTPEEDQ ILIDYIQAHG HGSWRALPKL AGLQRCGKSC RLRWTNYLRP 60 DIKRGKFSKE EEDIILHLHS VLGNKWSTIA TRLPGRTDNE IKNYWNTHMK KKLLHMGIDP 120 TTHQPRTDLY SCLPQLLALA NIKELLEHNQ LAQNLQYFNL LLQNNTGLST MLNRTNSIPQ 180 TQEETPSFVN DYQLALNQES EEMTQFLGLN SSVIQPLHEV SEFIST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-29	6	113	22	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Aan.19457	1e-136	trichome

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269\|PubMed:24902892, ECO:0000269\|PubMed:25482809}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024970417.1	1e-125	transcription factor MYB93-like
Swissprot	Q9S9Z2	1e-84	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A2U1QM91	1e-159	A0A2U1QM91_ARTAN; Homeodomain-like protein
STRING	evm.model.supercontig_36.134	9e-88	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-85	myb domain protein 93

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]