PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan021204
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family ARF
Protein Properties Length: 391aa    MW: 44144 Da    PI: 6.7827
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-80212PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.6e-22119218197
                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f+kvlt sd++++g +++ +k+a+++     + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv  ++L +gD+++F   + +++el+v+
  Aan021204 119 FCKVLTASDTSTHGGFSVLRKHANDClppldMTQPTPTQELVAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTCKRLVAGDSFIFL--RGENGELRVG 216
                99*********************999****9666677789************************************************..4499999999 PP

                EE CS
         B3  96 vf 97 
                + 
  Aan021204 217 IK 218
                86 PP
2Auxin_resp107.61.3e-35245324183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha+st++ F v+Y+Pr+  s+F+++++k+ +a+++k++vGmRfkm fe+eds+err++Gt+vgv+d++p +W++SkWrsLk
   Aan021204 245 ASHAVSTQTLFVVYYKPRT--SQFIISLNKYIEAINNKFTVGMRFKMPFEGEDSPERRFTGTIVGVEDISP-QWEDSKWRSLK 324
                 789***************6..9***********************************************99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-39108248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-38111234IPR015300DNA-binding pseudobarrel domain
CDDcd100176.53E-21118219No hitNo description
PROSITE profilePS5086311.646119221IPR003340B3 DNA binding domain
PfamPF023627.3E-21119219IPR003340B3 DNA binding domain
SMARTSM010191.1E-20119221IPR003340B3 DNA binding domain
PfamPF065075.2E-33245324IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MESTVLSSED LLYKELWKAC TGPLVDIPRD GERVFYFPQG HMEQLEATTN QDMKERIPQF  60
NLKSKILCRV VHTQLLAEKE TDEVYAQITL QPEANQSEID PTSPDECLAE PPRPNVQSFC  120
KVLTASDTST HGGFSVLRKH ANDCLPPLDM TQPTPTQELV AKDLHGFEWR FKHIFRGQPR  180
RHLLTTGWST FVTCKRLVAG DSFIFLRGEN GELRVGIKRF ARQPSSIPTS VISSQSMHLG  240
VLATASHAVS TQTLFVVYYK PRTSQFIISL NKYIEAINNK FTVGMRFKMP FEGEDSPERR  300
FTGTIVGVED ISPQWEDSKW RSLKVQWDEP ASILRPERVS PWEIEPFGTP VPTSLVESVA  360
PKCKRPRPPS EVPNLEPACP TASSVWNPSG X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1771034917357Auxin response factor 1
4ldw_A1e-1771034917357Auxin response factor 1
4ldw_B1e-1771034917357Auxin response factor 1
4ldx_A1e-1771034917357Auxin response factor 1
4ldx_B1e-1771034917357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363367KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022002059.10.0auxin response factor 9-like
SwissprotQ9ZPY60.0ARFK_ARATH; Auxin response factor 11
TrEMBLA0A2U1P2540.0A0A2U1P254_ARTAN; Auxin response factor
TrEMBLA0A2U1P2560.0A0A2U1P256_ARTAN; Auxin response factor
STRINGGorai.003G078000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.10.0auxin response factor 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]