PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan021222

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

MIKC_MADS

Protein Properties

Length: 248aa MW: 28723.9 Da PI: 9.1469

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-31529	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.3	7.4e-27	3	46	8	51
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRrng+lKKA+ELSvLCdaeva++ifs++gklye+ss Aan021222 3 SRQVTFSKRRNGLLKKAYELSVLCDAEVALMIFSQKGKLYEFSS 46 69****************************************96 PP
2	K-box	67.4	4.9e-23	69	157	9	97
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 e ++++l+ e+a ++++ie+L+ qR++lG+dL ++sl eL +L ++Le+ l++iR++K +l++eqi++l+ ke+ l een +L ++ Aan021222 69 EMEVNTQQLKDEAAIIQQKIEQLEAAQRKFLGQDLVQCSLDELSELDSKLEHTLRTIRARKAQLFKEQIDKLKAKERYLLEENARLCQE 157 567899******************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.609	1	48	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.6E-23	1	47	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-23	2	44	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.33E-27	2	64	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.72E-32	2	59	No hit	No description
PRINTS	PR00404	1.5E-18	10	25	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-18	25	46	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.5E-23	72	157	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	12.97	74	167	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
RVSRQVTFSK RRNGLLKKAY ELSVLCDAEV ALMIFSQKGK LYEFSSSNMQ KTIEKYREHV 60 KKDENCNPEM EVNTQQLKDE AAIIQQKIEQ LEAAQRKFLG QDLVQCSLDE LSELDSKLEH 120 TLRTIRARKA QLFKEQIDKL KAKERYLLEE NARLCQENKS LSQKRVVNPP QQHSMKQKDV 180 VICSHASSQF SDVETELFVG LASIKMHETY SSIVLLSLIN IPTEEGNEGK TAYMERRPPN 240 FSKFPRRP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	1e-17	3	59	15	71	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	1e-17	3	59	15	71	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	1e-17	3	59	15	71	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	1e-17	3	59	15	71	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	1e-17	3	59	15	71	Myocyte-specific enhancer factor 2A
3kov_B	1e-17	3	59	15	71	Myocyte-specific enhancer factor 2A
3kov_I	1e-17	3	59	15	71	Myocyte-specific enhancer factor 2A
3kov_J	1e-17	3	59	15	71	Myocyte-specific enhancer factor 2A
3p57_A	1e-17	3	59	15	71	Myocyte-specific enhancer factor 2A
3p57_B	1e-17	3	59	15	71	Myocyte-specific enhancer factor 2A
3p57_C	1e-17	3	59	15	71	Myocyte-specific enhancer factor 2A
3p57_D	1e-17	3	59	15	71	Myocyte-specific enhancer factor 2A
3p57_I	1e-17	3	59	15	71	Myocyte-specific enhancer factor 2A
3p57_J	1e-17	3	59	15	71	Myocyte-specific enhancer factor 2A
5f28_A	2e-17	3	59	16	72	MEF2C
5f28_B	2e-17	3	59	16	72	MEF2C
5f28_C	2e-17	3	59	16	72	MEF2C
5f28_D	2e-17	3	59	16	72	MEF2C
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Aan.8687	1e-167	trichome

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269\|PubMed:21609362}.
Uniprot	TISSUE SPECIFICITY: Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques. {ECO:0000269\|PubMed:18162590, ECO:0000269\|PubMed:21689171}.

Functional Description ? help Back to Top
Source	Description
UniProt	MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269\|PubMed:21609362, ECO:0000269\|PubMed:21689171}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023753340.1	1e-107	MADS-box protein AGL42-like isoform X3
Swissprot	Q9FIS1	5e-67	AGL42_ARATH; MADS-box protein AGL42
TrEMBL	A0A2U1QBW4	1e-141	A0A2U1QBW4_ARTAN; GSOC1 protein
STRING	Migut.F01157.1.p	9e-69	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62165.3	3e-61	AGAMOUS-like 42