PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan021243
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family SBP
Protein Properties Length: 243aa    MW: 27478 Da    PI: 5.439
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S54985781PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-465160996PU_unrefplantGDBView CDS
PUT-183a-Artemisia_annua-61679PU_refplantGDBView CDS
PUT-183a-Artemisia_annua-61680PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP26.41.9e-081746231
               -SSTT-----TT--HHHHHTT--HHHHT-S CS
        SBP  2 CqvegCeadlseakeyhrrhkvCevhskap 31
               Cqv+ C  dl  ak+yh++h+vC+++ + +
  Aan021243 17 CQVDCCGDDLRVAKQYHQKHRVCSAYHNNS 46
               ***********************9866554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.5E-71543IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-71645IPR004333Transcription factor, SBP-box
PROSITE profilePS513529.85480206IPR013766Thioredoxin domain
SuperFamilySSF528332.15E-2891204IPR012336Thioredoxin-like fold
Gene3DG3DSA:3.40.30.101.4E-3195215IPR012336Thioredoxin-like fold
PfamPF000855.4E-23100202IPR013766Thioredoxin domain
CDDcd029615.98E-29101201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045454Biological Processcell redox homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
XGSRNNETVD MKGVFGCQVD CCGDDLRVAK QYHQKHRVCS AYHNNSNKQR QNPKVVSIYS  60
KVKVTTKSYT KRDRIIIATL FLISSLIILS LLVHDTNAEV ITLTEATFFD KVKEKDTAWF  120
VKFCVPWCKH CKKLGSLWDD FGKTMEGEDE IEVGEVDCGT NKPLCSKVKI GSYPTFKLFY  180
NGEEVARYRG TKDVESLKTF VLEETEKAAA AANAELEDDK DFDLPIEVVL EIISADTFLD  240
DNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2diz_A3e-21962065114Thioredoxin domain-containing protein 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.195750.0trichome
Functional Description ? help Back to Top
Source Description
UniProtActs as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023751501.18e-84protein disulfide-isomerase 5-1
SwissprotQ8GYD15e-65PDI51_ARATH; Protein disulfide-isomerase 5-1
TrEMBLA0A2J6M5C42e-82A0A2J6M5C4_LACSA; Uncharacterized protein
TrEMBLA0A2U1NPE62e-77A0A2U1NPE6_ARTAN; NF-Y protein
STRINGXP_009338286.13e-66(Pyrus x bretschneideri)
Publications ? help Back to Top
  1. Houston NL, et al.
    Phylogenetic analyses identify 10 classes of the protein disulfide isomerase family in plants, including single-domain protein disulfide isomerase-related proteins.
    Plant Physiol., 2005. 137(2): p. 762-78
    [PMID:15684019]
  2. Zhang J, et al.
    A polyadenylation factor subunit implicated in regulating oxidative signaling in Arabidopsis thaliana.
    PLoS ONE, 2008. 3(6): p. e2410
    [PMID:18545667]
  3. d'Aloisio E, et al.
    The Protein Disulfide Isomerase gene family in bread wheat (T. aestivum L.).
    BMC Plant Biol., 2010. 10: p. 101
    [PMID:20525253]
  4. Yuen CY,Wong K,Christopher DA
    Phylogenetic characterization and promoter expression analysis of a novel hybrid protein disulfide isomerase/cargo receptor subfamily unique to plants and chromalveolates.
    Mol. Genet. Genomics, 2016. 291(1): p. 455-69
    [PMID:26300531]