PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan021250
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 24667 Da    PI: 7.6646
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-625160997PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.55.6e-212391451
               HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               skRr g+lKKA+E+SvLCda+va+i+fs++gkl eys+
  Aan021250  2 SKRRSGLLKKAHEISVLCDADVALIVFSTKGKLCEYST 39
               8***********************************96 PP
2K-box104.11.7e-34551541100
      K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                y++ + +s++++ + s++ e+akLk++ie Lq+++Rhl+GedL+sL+lkeLq+Le+qL+++lk++R +Kn+l++e+i+ lqkk kelq++n+ L+kk++e
  Aan021250  55 YAEMQLTSTHNESQGSWTLEHAKLKARIELLQKSKRHLMGEDLDSLTLKELQSLEHQLDTALKHVRLRKNQLMFESISVLQKKDKELQNQNNVLSKKVKE 154
                56778889999999***********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.61141IPR002100Transcription factor, MADS-box
PfamPF003192.2E-16237IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-22270IPR002100Transcription factor, MADS-box
SMARTSM004328.8E-12240IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-16318IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-161839IPR002100Transcription factor, MADS-box
PfamPF014862.0E-2864152IPR002487Transcription factor, K-box
PROSITE profilePS5129716.83768158IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
XSKRRSGLLK KAHEISVLCD ADVALIVFST KGKLCEYSTD SSMDRILERY ERYSYAEMQL  60
TSTHNESQGS WTLEHAKLKA RIELLQKSKR HLMGEDLDSL TLKELQSLEH QLDTALKHVR  120
LRKNQLMFES ISVLQKKDKE LQNQNNVLSK KVKEVEKDLA QQPLVEQQNP DNMLHLDTYT  180
STPCQVGGDG VVEKVPGQAR PIIVLPPWML QHMNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A8e-14741482397Developmental protein SEPALLATA 3
4ox0_B8e-14741482397Developmental protein SEPALLATA 3
4ox0_C8e-14741482397Developmental protein SEPALLATA 3
4ox0_D8e-14741482397Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.18630.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of tuberization. {ECO:0000269|PubMed:8756601}.
UniprotTISSUE SPECIFICITY: Abundant in vegetative organs. {ECO:0000269|PubMed:8543185}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022034803.11e-106truncated transcription factor CAULIFLOWER A-like
SwissprotQ424296e-86AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLG5EN311e-135G5EN31_9ASTR; APETALA1 and FRUITFULL like protein
STRINGXP_009625854.13e-96(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-85AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]