PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan021252
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C3H
Protein Properties Length: 217aa    MW: 24375.3 Da    PI: 9.7729
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-56160994PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-064366226
               -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
               +++ Cr + +   C++G+ C+F+H 
  Aan021252 43 REATCRQYEE-NVCNRGGYCNFMHL 66
               6789**9999.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF549284.62E-9242IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.3E-8338IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018482.4E-162347IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.4654168IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-44366IPR000571Zinc finger, CCCH-type
PRINTSPR018482.4E-165870IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
XVGNVYVQFR EEEHAASALQ NLTGRFYAGR PIIVDFSPVT DFREATCRQY EENVCNRGGY  60
CNFMHLKKIS RELRRQFLGE AGGGEVEAEA TVRKGTVVMK NVAIAGGSGR RGAGDYADHD  120
RHHDRSGRRP RSRSPGRRGG RSRSPGGKRN RSPIREGSAE RRAKIEQWNR EREQADSRPK  180
TATDNNNNDG AVSPNGDQYY DPHQQPQQQH DNGGYDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A2e-23278104180Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.183932e-91leaf
Functional Description ? help Back to Top
Source Description
UniProtNecessary for the splicing of pre-mRNA (By similarity). Probably active at the 3' splice sites. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024971648.11e-83splicing factor U2af small subunit B-like
RefseqXP_024971655.11e-83splicing factor U2af small subunit B-like
SwissprotQ9FMY59e-46U2AFB_ARATH; Splicing factor U2af small subunit B
TrEMBLA0A2U1PLC62e-97A0A2U1PLC6_ARTAN; Nucleotide-binding, alpha-beta plait
STRINGXP_008779329.14e-81(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.16e-11C3H family protein
Publications ? help Back to Top
  1. Day IS, et al.
    Interactions of SR45, an SR-like protein, with spliceosomal proteins and an intronic sequence: insights into regulated splicing.
    Plant J., 2012. 71(6): p. 936-47
    [PMID:22563826]
  2. Kim DW,Jeon SJ,Hwang SM,Hong JC,Bahk JD
    The C3H-type zinc finger protein GDS1/C3H42 is a nuclear-speckle-localized protein that is essential for normal growth and development in Arabidopsis.
    Plant Sci., 2016. 250: p. 141-153
    [PMID:27457991]
  3. Park HY, et al.
    The Arabidopsis splicing factors, AtU2AF65, AtU2AF35, and AtSF1 shuttle between nuclei and cytoplasms.
    Plant Cell Rep., 2017. 36(7): p. 1113-1123
    [PMID:28432478]