PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan021257
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family bHLH
Protein Properties Length: 169aa    MW: 18814.1 Da    PI: 7.6086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41973282PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-88133PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12952755
               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
               e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Aan021257  9 EAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 52
               79*********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.11251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.32E-13956No hitNo description
PfamPF000105.6E-10952IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-17963IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-18967IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
XTVVDEVVEA ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAITYITD LQKKLKEMES  60
ERSGSHGSTS METPNNSNNG SSLEKIEIEA DKDQVTVRVS CPVDTHPISK VIQAFKEAQI  120
RVVDSKMAAA NDKVFHIFVI KSQGPEQLTK EKLMAVFSKE SSSSLNSLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-248621064Transcription factor MYC2
5gnj_B3e-248621064Transcription factor MYC2
5gnj_E3e-248621064Transcription factor MYC2
5gnj_F3e-248621064Transcription factor MYC2
5gnj_G3e-248621064Transcription factor MYC2
5gnj_I3e-248621064Transcription factor MYC2
5gnj_M3e-248621064Transcription factor MYC2
5gnj_N3e-248621064Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.82010.0trichome
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023740458.14e-81transcription factor bHLH13-like
SwissprotA0A3Q7ELQ21e-63MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A2U1M7C31e-108A0A2U1M7C3_ARTAN; Myc-type, basic helix-loop-helix (BHLH) domain-containing protein
STRINGVIT_15s0046g00320.t017e-68(Vitis vinifera)
STRINGcassava4.1_003856m1e-67(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.12e-49ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]