PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan021382
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family ERF
Protein Properties Length: 278aa    MW: 30829.4 Da    PI: 8.2096
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-39596PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20126175255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ kl+g
  Aan021382 126 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDIAAYKLRG 175
                59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.96E-34125185No hitNo description
Gene3DG3DSA:3.30.730.103.7E-32126184IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-23126184IPR016177DNA-binding domain
PROSITE profilePS5103223.499126183IPR001471AP2/ERF domain
SMARTSM003803.1E-38126189IPR001471AP2/ERF domain
PRINTSPR003672.3E-11127138IPR001471AP2/ERF domain
PfamPF008476.9E-14127175IPR001471AP2/ERF domain
PRINTSPR003672.3E-11149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MASATMDLWN LDFQQFNGGE LMDALEPFMK LDQNYQNTLP YSSPSTSYPS PTQQQPGFYP  60
DPSFTHDPFF NQQPVSSFGL NQLTPSQIHQ IQAQINLPNF NTNYLGPKPV TMKQTGSGSP  120
PKPTKLYRGV RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE EAALAYDIAA YKLRGDYARL  180
NFPHLRHNGS HIAGACGDYA PLHSSVDAKL QAICQNLAEG KSVDGGKKKS QRRSTVVKPP  240
VKLPATVVEQ PEVVKVEGSS ELSELSFPDF TAEDGGAX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-21125183160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.189220.0leaf| trichome
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024970229.11e-129ethylene-responsive transcription factor RAP2-4
SwissprotQ8H1E47e-85RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0B4MJI11e-177A0A0B4MJI1_9ASTR; Ethylene response factor DREB1-1
STRINGBra008343.1-P7e-87(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-75related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]