PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan021454
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family ARF
Protein Properties Length: 660aa    MW: 74088.6 Da    PI: 5.5226
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55106603PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-80213PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.6e-23116217199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+kvlt sd++++g +++ +k+a+e+       +   + +++l+  d++g +W++k+i+r++++r++lt+GW+ Fv  ++L +gD++vF   + +++el+
  Aan021454 116 FCKVLTASDTSTHGGFSVLRKHANEClpaldmtQ--ATPTQDLVALDLHGTEWRFKHIFRGQPRRHLLTTGWSTFVTNKRLVAGDSFVFL--RGENGELR 211
                99****************************9543..445568************************************************..44999999 PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                 +v+r+
  Aan021454 212 AGVRRQ 217
                999986 PP
2Auxin_resp106.92.3e-35242321183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha+st++ F v+Y+Pr+  s+F++ ++k+ +a+++ +svGmRfkm+fe+eds+err++Gt+vgv+d++p +W++SkWrsLk
   Aan021454 242 ASHAVSTQTRFAVYYKPRT--SQFIIGLNKYIEAVNNAFSVGMRFKMRFEGEDSPERRFTGTIVGVEDISP-QWEDSKWRSLK 321
                 789***************6..9***********************************************99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-39106245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-40109231IPR015300DNA-binding pseudobarrel domain
CDDcd100173.51E-19114216No hitNo description
PfamPF023622.9E-21116217IPR003340B3 DNA binding domain
PROSITE profilePS5086311.871116218IPR003340B3 DNA binding domain
SMARTSM010199.4E-20116218IPR003340B3 DNA binding domain
PfamPF065079.2E-33242321IPR010525Auxin response factor
PfamPF023093.8E-7537584IPR033389AUX/IAA domain
PROSITE profilePS5174525.501548629IPR000270PB1 domain
SuperFamilySSF542778.5E-13549624No hitNo description
PfamPF023093.9E-6594632IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MDNQGLLEDP LYKELWKACA GPLVEVPRHG ERVYYFPQGH MEQLEASTNE ELNERIPLFN  60
LKSKILCRVV HTQLMAEHDS DEVYAQITLL PEADQTDPTS PDACVPEPPR PTVHSFCKVL  120
TASDTSTHGG FSVLRKHANE CLPALDMTQA TPTQDLVALD LHGTEWRFKH IFRGQPRRHL  180
LTTGWSTFVT NKRLVAGDSF VFLRGENGEL RAGVRRQARQ QTNMPSSVIS SQSMHLGVLA  240
TASHAVSTQT RFAVYYKPRT SQFIIGLNKY IEAVNNAFSV GMRFKMRFEG EDSPERRFTG  300
TIVGVEDISP QWEDSKWRSL KVQWDEPASI LRPERVSPWE IEPFGTPVPT SLVESVAPKC  360
KRPRPPSEVP NLEPACPTAS SVWNPSGQIS CTPDGQTSDY QRSWLQNQTE SGTTVCHIRT  420
PMEVNWLSSP IMGSHNLFVD EMEDQKGLPA RSAHSIQTPV DMKRSESISS FRIFGFDLKS  480
PTKGDTIPET APLTSSNVFH TFADEQMPSP LSLGISDQKS DLSKDCKDQG QLQVSPKEVQ  540
SKQSTCTRSR TKVQMQGIAV GRAVDLTALK GYDELINELE EMFEIKGELH PRNQWEIIFT  600
DDEGDMMLMG DDPWEEFCSM VKRILICSSQ DVKKMRAGIK HPFSSIDNEV SGFSLEAVEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.0534613357Auxin response factor 1
4ldw_A0.0534613357Auxin response factor 1
4ldw_B0.0534613357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360364KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.108560.0trichome
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024993477.10.0auxin response factor 18-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2U1P2540.0A0A2U1P254_ARTAN; Auxin response factor
STRINGVIT_02s0025g01740.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9