PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan021508
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C3H
Protein Properties Length: 496aa    MW: 53770.4 Da    PI: 7.7279
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41935021PU_unrefUnigeneView CDS
gnl|UG|Aan#S41935022PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-513160994PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.19.8e-11137161226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                +++ C +++ t tCk+Gd+C+F H+
  Aan021508 137 GEKDCAHYMLTRTCKFGDSCRFDHP 161
                7889********************9 PP
2zf-CCCH32.71.3e-10190214327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   C+ff++t  Ck+G++CkF+H++
  Aan021508 190 VQDCPFFLKTQKCKFGPSCKFNHPK 214
                678********************96 PP
3zf-CCCH42.79.6e-14237261327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C+f+++tG CkyG++CkF+H++
  Aan021508 237 EPPCSFYMKTGVCKYGSTCKFHHPK 261
                79*********************96 PP
4zf-CCCH34.92.7e-11311337127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++ C+f+++tG Cky ++C+++H++
  Aan021508 311 PGEVDCPFYLKTGSCKYSATCRYNHPE 337
                57899********************96 PP
5zf-CCCH33.38.5e-11393415426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 +C+++++tG C +G+rCk++H+
  Aan021508 393 LECDYYMKTGACMFGERCKYHHP 415
                58********************9 PP
6zf-CCCH41.91.6e-13447470427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                ++C+++++tG CkyG++CkF H+p
  Aan021508 447 VNCPYYMKTGACKYGATCKFDHPP 470
                68********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.638135163IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4135162IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-8137161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5137162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-4141160IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5187214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.746187215IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8189214IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5190216IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4193213IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-7234261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.882234262IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-11237261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6238262IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5239260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267310338IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6310337IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-9312337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.967389417IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-6389416IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6392418IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8394415IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4395415IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-7443470IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84443471IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-11447470IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5447470IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5449468IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MANHLYGYGT SSNPSTKSLI DPYASSDPSY YTSSRIPGAS DPLTSSFNYS SMYGNNKDSM  60
AGRSTLWNGG PPGVDLNSSV DSIYSSFKRP ASEALYHQSL LGTHNTIGQG EAWYSANPLV  120
KRPRFQSSLS VFPQRPGEKD CAHYMLTRTC KFGDSCRFDH PLWVPEGGIP DWKEVPVTDT  180
SEPLPERQGV QDCPFFLKTQ KCKFGPSCKF NHPKDKAATT SALENNEGSE LPERPSEPPC  240
SFYMKTGVCK YGSTCKFHHP KDIVVAIGGV GNTNGEQIEG VTGGTAGSLA PSNPPVTPAL  300
LHNSKGLPIR PGEVDCPFYL KTGSCKYSAT CRYNHPERYA MDPPAAIAAT SALHMNLGLV  360
NPTPPFLQTL DPRIGQTTLG LGTSIYPQRP GQLECDYYMK TGACMFGERC KYHHPLDRTA  420
HALSAKEGQQ NTVKLTLAGL PRREGAVNCP YYMKTGACKY GATCKFDHPP PGEVMAAVTS  480
QGASTTTGEE VKEEQP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024966529.10.0zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q31e-176C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2U1NLY80.0A0A2U1NLY8_ARTAN; Floral homeotic protein (HUA1)
STRINGXP_010260864.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-179floral homeotic protein (HUA1)