PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan021599

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

TCP

Protein Properties

Length: 256aa MW: 27796.3 Da PI: 6.1692

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41936582	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.1	3.9e-35	54	132	4	74
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........e 74 +++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a++ai+ +tgt++ +a ++ Aan021599 54 PRKSTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEEAIIRATGTGTVPAIAVnvngtlkiP 132 5799**********************************************************88888443222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.3E-29	57	133	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.413	58	112	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MASINDNENM ESEEKEVVTE PLLEDPPAPV EITFFKEEPM MENHETKQMV AQVPRKSTKD 60 RHTKVEGRGR RIRMPATCAA RIFQLTRELG HKSDGETIRW LLEHAEEAII RATGTGTVPA 120 IAVNVNGTLK IPTTTTTSSN GEEGDGRKRK RGGNSEFYDV NDSGFAPVAP VVPQGLMPVW 180 TMGAPQGGTF FMISPNGAPS SAHIPQLWAI PASATPVFNV PMSSYVSAMQ ASDHSGASGV 240 EGVQHRQDRY LTVAKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	151	GRKRKRG

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269\|PubMed:25527103}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024961647.1	1e-101	transcription factor TCP19-like
Swissprot	O64647	1e-59	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A2U1M9G1	1e-179	A0A2U1M9G1_ARTAN; Transcription factor, TCP
STRING	PGSC0003DMT400062327	3e-76	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	1e-54	TCP family protein