PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan021628
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family HD-ZIP
Protein Properties Length: 235aa    MW: 27092.1 Da    PI: 8.0896
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-137322PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94e-1978132256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ ++t+eq++ Le+ F+ ++++++ +++eLAkkl+L  rq+ vWFqNrRa+ k
  Aan021628  78 RKKLKLTTEQITLLEDSFKIHSTLNTGQKQELAKKLHLLPRQIEVWFQNRRARTK 132
                788899***********************************************98 PP
2HD-ZIP_I/II111.65.2e-3678163186
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                  +kk++l++eq++lLE+sF+ +++L++ +K+ela++L+l prq++vWFqnrRARtk+kq+E++++ Lk+++++l+een+rL+ke ++
    Aan021628  78 RKKLKLTTEQITLLEDSFKIHSTLNTGQKQELAKKLHLLPRQIEVWFQNRRARTKLKQIEQECALLKKCCETLSEENRRLKKELRD 163
                  69********************************************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-1759132IPR009057Homeodomain-like
SuperFamilySSF466891.34E-1766135IPR009057Homeodomain-like
PROSITE profilePS5007116.89274134IPR001356Homeobox domain
SMARTSM003898.9E-1776138IPR001356Homeobox domain
PfamPF000464.3E-1678132IPR001356Homeobox domain
CDDcd000863.49E-1478135No hitNo description
PROSITE patternPS000270109132IPR017970Homeobox, conserved site
SMARTSM003402.3E-8134177IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
XRVSKKRGFW LDLALPIHPK VEVTDHGDCE HKHDEEKDDH DSCSSKTIDD LEEKEERGEK  60
RSDSSNFDVY HDNSGGSRKK LKLTTEQITL LEDSFKIHST LNTGQKQELA KKLHLLPRQI  120
EVWFQNRRAR TKLKQIEQEC ALLKKCCETL SEENRRLKKE LRDARCSSKL DHHQQQPQLP  180
PSFYIKYSSK TETRHPCDNI GKTGEDMKPV AAVNGSTVVQ EQDNSNKKNA TATLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126134RRARTKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023740538.13e-96homeobox-leucine zipper protein HAT22-like
SwissprotA2XE763e-42HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL43e-42HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A251UPJ12e-83A0A251UPJ1_HELAN; Putative leucine zipper, homeobox-associated, Homeodomain-like protein
STRINGORGLA03G0089600.11e-40(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-39homeobox from Arabidopsis thaliana