PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan021702

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

bHLH

Protein Properties

Length: 226aa MW: 25529.6 Da PI: 6.0403

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41901983	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-55894	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	8.9e-13	146	193	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++i+ +++ L++l+P + sk +Ka+iL + + Y++ Lq Aan021702 146 SHSIAERARREKIKRKMQFLQDLVPGC----SKITNKAAILDEIITYVQRLQ 193 8************************....899***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.64E-10	140	197	No hit	No description
SuperFamily	SSF47459	1.06E-15	140	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.907	142	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-18	142	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-10	146	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-7	148	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MGEILQIFDH SPPSHYQMHH HGHFQHGNLE NVGSQLNGVW ESESPLSSIF NFGCSEVAEN 60 SFMGFSVDGL SKVTTEVEQT QSSRKRKLEL DEVEVDSQKQ SVECDSELVE PPKAKRNTRN 120 GNSKPKVDPK TDYIHVRARR GQATDSHSIA ERARREKIKR KMQFLQDLVP GCSKITNKAA 180 ILDEIITYVQ RLQMEVEVLT MELAASTTSV DLEMNNSLPQ EAMNTF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Aan.18843	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024979885.1	5e-73	transcription factor bHLH62-like isoform X1
Refseq	XP_024979894.1	4e-73	transcription factor bHLH62-like isoform X2
Swissprot	Q9SRT2	2e-38	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A2U1MK41	1e-164	A0A2U1MK41_ARTAN; Myc-type, basic helix-loop-helix (BHLH) domain-containing protein
STRING	EOX91062	9e-38	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	5e-33	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]