PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan021788
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family TCP
Protein Properties Length: 215aa    MW: 24043.6 Da    PI: 6.5834
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-10160990PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP71.72.3e-221961766
        TCP 17 gRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............................................s 66
               +RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl  ak++i+el+ +                                              +
  Aan021788  1 LRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDVAKHEIDELPPLqmplgsfahlglqptinvasqsenlegvktstcgiswedywnpnklK 96
               6************************************************77777777766655555444444444333333333333222222220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.0E-191106IPR005333Transcription factor, TCP
PROSITE profilePS5136924.872146IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
LRDRRVRLSV PTAIQLYDLQ DRLGLNQPSK VVDWLLDVAK HEIDELPPLQ MPLGSFAHLG  60
LQPTINVASQ SENLEGVKTS TCGISWEDYW NPNKLKERDH FFAQSSNQSS SVPLMFNNGV  120
PNSSFLKLNP SSLSLAQFGS YGSMAPHQQE DSSHNFNINM SGSQHLVYPP PSHDHNSRNH  180
TDPKHLNFEM LSSSSSSNSH IPLYTMNQGM IGPFX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-16147955Putative transcription factor PCF6
5zkt_B3e-16147955Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022016872.11e-103transcription factor TCP17-like
TrEMBLA0A2U1P9581e-144A0A2U1P958_ARTAN; Transcription factor, TCP
STRINGXP_009792504.16e-41(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-25TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5