PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn000081
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 286aa    MW: 33024.7 Da    PI: 8.6815
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn000081genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.21.5e-1934119191
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 ++Y ++A+  GF v++++sk++ ++g+  + t++C + gk +++  k     + +++ +tgC+a++++++++dgkw++++++leHnHe++p
  Achn000081  34 NYYVSFARVQGFVVVTRSSKTH-KDGRRRHITYCCHRGGKLRTKALK----VKAHPTAKTGCQASMNISLHNDGKWVLNTIKLEHNHEMCP 119
                 69**********9999887776.8888*************9998777....9999**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.3E-1734119IPR004330FAR1 DNA binding domain
PfamPF105511.6E-10240276IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDCDAYPLEE DPNLENVGEP KVRMSFDSEH EARNYYVSFA RVQGFVVVTR SSKTHKDGRR  60
RHITYCCHRG GKLRTKALKV KAHPTAKTGC QASMNISLHN DGKWVLNTIK LEHNHEMCPI  120
KSRYLKFNRI IPPHTKRLLE MNCSAGIRLN KTISSCLLEA KGHEKLTWSE KDARNYMDQV  180
QHSQLKEGDA EAMHQYFNRM REDNNNFFYA MDLDKEHRLC NVFWADARSR EAFKEFGDMV  240
TFDTTYLVNK YNMPFASFVG VNHHGQSILL GCGLVQPHFF ICVVV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028065479.11e-103protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A251PQZ52e-91A0A251PQZ5_PRUPE; Uncharacterized protein
TrEMBLM5WNR62e-91M5WNR6_PRUPE; Uncharacterized protein
STRINGEMJ154174e-92(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-49FAR1-related sequence 5