PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn000501
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 224aa    MW: 25713.1 Da    PI: 4.7669
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn000501genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS147.81e-4572102214
        GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                 ++lLl+ Aeav++++  la+++++rl++l    ++g +p++Rla +ft++L+ +  +      ++l++ +++ +++++ ++a+++++e+sP++kf+h+t
  Achn000501   7 TDLLLTGAEAVETENWPLASTVIERLKTLlfYQENGdEPFHRLALFFTQGLHYKSIK-----HNSLEVFQEPISKQDNCISAFQMLQELSPYVKFAHFT 100
                 689*************************9885666658**************99888.....678888888888999********************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 aNqaIlea+e++++vH+iDfdi +G+QW +L+  La R++   s+ iT+  + +++++ ++++tg+rL++fA+++  +f f+ +v+++ e le  e   
  Achn000501 101 ANQAILEATESDNEVHVIDFDIVEGVQWSPLMIDLALRKDF--SFHITATID-HEQNSGRVQQTGRRLQDFADSVSFKFIFDHMVMEKEEHLEGIEV-- 194
                 **************************************765..899999877.446999***********************998887777643333.. PP

        GRAS 197 kpgEalaVnlvlqlhrll 214
                   g +l  n++ +  +++
  Achn000501 195 --GCTLMANCMTHQLHMP 210
                 ..4456666666555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.6641223IPR005202Transcription factor GRAS
PfamPF035143.5E-437210IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEESSLTDLL LTGAEAVETE NWPLASTVIE RLKTLLFYQE NGDEPFHRLA LFFTQGLHYK  60
SIKHNSLEVF QEPISKQDNC ISAFQMLQEL SPYVKFAHFT ANQAILEATE SDNEVHVIDF  120
DIVEGVQWSP LMIDLALRKD FSFHITATID HEQNSGRVQQ TGRRLQDFAD SVSFKFIFDH  180
MVMEKEEHLE GIEVGCTLMA NCMTHQLHMP HRGFSMVNTF WVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-201417827192Protein SCARECROW
5b3h_A2e-201417826191Protein SCARECROW
5b3h_D2e-201417826191Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276350.12e-93PREDICTED: nodulation-signaling pathway 2 protein
TrEMBLA0A200PYP22e-97A0A200PYP2_9MAGN; Transcription factor GRAS
STRINGPOPTR_0019s02540.15e-88(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-30GRAS family protein