PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn000821

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 149aa MW: 17464.9 Da PI: 10.4203

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn000821	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.9	3.4e-18	11	118	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 k+Y++Y+++ GF +r+++s+k +r + +t+ fv kegk ++ +k +k++r+ ++ r+gC+a+l++k++k + kw+vt + Achn000821 11 KYYEDYGRQNGFWIRTRTSSKGqNRLNDVTSVLFVYAKEGKYVSKAEKygvkgndergeddkvkPKKRKRSCSTARCGCNAHLRIKRDKwSLKWKVTVF 109 69***********9988876467788**********9999999********99777788888999******************** PP FAR1 82 eleHnHela 90 + HnH+l+ Achn000821 110 DDAHNHQLV 118 *****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.6E-16	11	118	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MSFETIEEAR KYYEDYGRQN GFWIRTRTSS KGQNRLNDVT SVLFVYAKEG KYVSKAEKYG 60 VKGNDERGED DKVKPKKRKR SCSTARCGCN AHLRIKRDKW SLKWKVTVFD DAHNHQLVTP 120 CNRMKMKSNR HMPETVKDLT KAFHRENL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	80	KKRKRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004289266.1	1e-52	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_024042736.1	1e-51	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2R6R5G6	3e-54	A0A2R6R5G6_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	XP_004289266.1	4e-52	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	2e-10	FAR1-related sequence 11