PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn001311
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 306aa    MW: 33753.9 Da    PI: 4.8399
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn001311genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78e-20153203255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+ta eAaka+++a+ +++ 
  Achn001311 153 HYRGVRRRP-WGKYAAEIRDPKRRG--SRVWLGTFDTAIEAAKAYDRAAFEMRR 203
                 69*******.**********96554..************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.13E-30152211No hitNo description
PROSITE profilePS5103223.63153211IPR001471AP2/ERF domain
PfamPF008475.5E-14153203IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-31153212IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-22153213IPR016177DNA-binding domain
SMARTSM003806.1E-35153217IPR001471AP2/ERF domain
PRINTSPR003672.1E-10154165IPR001471AP2/ERF domain
PRINTSPR003672.1E-10177193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MATTDEISAL ELIKLHLLGE VSPVGKFVAK LSEVSSSGSD SLSSQTSSCD SQITISSCVN  60
SNEVNDTDLF DFDPYSVDFF EFESKPQTID FATPRPVDLS PKSSSQSRLV ERRLKIDLAP  120
VKPPVTNLEW LEFSEQAAEV SEQKPSEAEE RQHYRGVRRR PWGKYAAEIR DPKRRGSRVW  180
LGTFDTAIEA AKAYDRAAFE MRRSKAILNF PLEVGKSNDT AAAAPVDGGR KRTREVEETT  240
EEMPAKKEKS TESDASVLSN LTTCPLTPSS WMTVWDPNGS GIFNVPMLSP LSPHPMMGFT  300
PLTVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-28152214163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-28152214466ATERF1
3gcc_A3e-28152214466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8698640.0GQ869864.1 Actinidia deliciosa ethylene response factor 13 (ERF13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028112382.11e-113ethylene-responsive transcription factor 5-like
TrEMBLD8VD400.0D8VD40_ACTDE; Ethylene response factor 13
STRINGXP_010275423.14e-83(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.16e-47ethylene responsive element binding factor 5