PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn002281
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 167aa    MW: 18824.4 Da    PI: 7.8515
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn002281genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1821e-2529117189
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                 +fYn Y+  +GFs+r+ +s+ks+++g  + r+fvCsk+g+r ++k+     +++r+etrt+C+a++ +++++ ++kw+v  +e++HnH+l
  Achn002281  29 EFYNVYGIVMGFSIRICYSTKSQKDGVLIGRKFVCSKQGTRGKDKRC-LVVEHPRKETRTKCDANMSISLNReTSKWVVVGFEEKHNHSL 117
                 6******************************************9998.88899******************99***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.2E-2229117IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MNVKENEHFI EDYTPCLQKE FETEDAAYEF YNVYGIVMGF SIRICYSTKS QKDGVLIGRK  60
FVCSKQGTRG KDKRCLVVEH PRKETRTKCD ANMSISLNRE TSKWVVVGFE EKHNHSLHLP  120
ECAHMMKSQR TIYEAQAINV DIAADSGLSL KASHDLLSVQ AGGRSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051873.11e-65protein FAR1-RELATED SEQUENCE 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30211740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-22FAR1 family protein