PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn002521
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 208aa    MW: 21792.7 Da    PI: 8.04
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn002521genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-1855103255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+G+r  +++g+Wv+eIr+p++   +kr++lg++ t+e+Aa+a++aa+++l+g
  Achn002521  55 LYRGIR--SRSGKWVSEIREPRK---TKRVWLGTYPTPEMAAAAYDAAALALKG 103
                 69***6..678*********843...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-1154103IPR001471AP2/ERF domain
CDDcd000181.13E-1554111No hitNo description
SuperFamilySSF541712.75E-1855111IPR016177DNA-binding domain
PROSITE profilePS5103220.5655111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2655111IPR001471AP2/ERF domain
SMARTSM003802.5E-2855119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MNKKVPVPGT IDRGDPHAQR TIAPTDTQSR KPLYKREKTM SGCGAGRQAT GKHPLYRGIR  60
SRSGKWVSEI REPRKTKRVW LGTYPTPEMA AAAYDAAALA LKGGDAVLNF PSCVGSYPVP  120
PSTSPADVRA AAAVAAAMMA EGGAGSGAME GGPVGGNEFV DEEALFDLPN LLVDMAGGMM  180
MSPPRIESLP SDDSPGNCDG DRLWSYV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1449116168ATERF1
3gcc_A3e-1449116168ATERF1
5wx9_A4e-1446112573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13138PLYKREKT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033804.19e-70PREDICTED: ethylene-responsive transcription factor ERF026-like
SwissprotQ9FJ901e-49ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A2R6QK531e-116A0A2R6QK53_ACTCH; Ethylene-responsive transcription factor
STRINGPOPTR_0003s12120.19e-69(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-40ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]