PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn002631
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 936aa    MW: 105734 Da    PI: 8.539
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn002631genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00056690713123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 y C  Cg+ F +++ L++H +  H
  Achn002631 690 YMCRVCGRKFHTNDKLVNHFKQlH 713
                 89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF102485.1E-18120313IPR019376Myeloid leukemia factor
SuperFamilySSF1030251.73E-11458495No hitNo description
TIGRFAMsTIGR033172.2E-16459504IPR017703YgfZ/GcvT conserved site
Gene3DG3DSA:3.40.50.10103.1E-11606689IPR029060PIN domain-like
SuperFamilySSF576676.86E-5688716No hitNo description
PROSITE profilePS5015712.175690718IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-4690714IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280692713IPR007087Zinc finger, C2H2
CDDcd061671.17E-15707842No hitNo description
PfamPF019363.2E-9763845IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10103.1E-11775843IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 936 aa     Download sequence    Send to blast
MADSVDLIRN PVDSKKLVFD DICGRILMLV RCSLDKFTMI TQFDRKSWFL KWEQGTWKMQ  60
GNRGGGDPFF NFGDPFAGLG GFSGFAGQRS LASSFFGGRD PFDDPFFTSP FGGLFEPSIF  120
RHTGNPFTDA HASGYLEHQV PRPNRSRGPI IEELNSDDER EQEDKEEEEK DNPRKHSRSS  180
KEPYVEDPDD ETEGRKSKQM QYMNDFSRAN YAHSRPQTHS FTFQSSSVSY GGVNGTHYTS  240
SRTMRTGSDG LTIDESKEAD TASGQAAHRI FKGIHDKGHT VARKLNSDGR VDTMQTLHNL  300
NEEELSGFEQ VWNGNAKHLP GWSEGLRDGS GTSGQNGPAS RGRGGWALPS TEHPQHSGRL  360
HRNPPSKNLL TILYSPDPPR QCGSHGLAPP DSDRGPVPRL GHRQVRPGTG DQRWPAPDDL  420
ELYADVDGSV LDEVLGTLKN YWIILNVDMK FVVKGSSFGE VMPLEYNLAG PNAVSFDKGC  480
YVGQELVACT HHLGVIRKRL LPLKFVDNNG KEAEKKLAPG LEVTSAVSGK SRDRDYYPRM  540
PRFGPSKITR KYHLGMLALA EIRNILHAIQ SREIKTLAPR IVLYRYCHFE ANQRFSPSDP  600
PLIFEQKNPS KNVAIFWDLD NKPPKSFPPY EAAVRLKKAA AEFGVVRYMV AYANSHAFSY  660
VPPEVREQRK ERKTLNKLEN KGVIKPVEPY MCRVCGRKFH TNDKLVNHFK QLHEREQTKR  720
LNQIDSARGN RRVKLVAKFS MKMEKYKNAS RDVLTPKVGY GLADELKRAG FWVRTVSDKS  780
QAADIALRNH MVDMMDRRRV ECLVLVSDDS DFVELLKEAR LRCFKTVVVG DSSDGALKRT  840
ADAGFSWQEI MMGKAKKEAV SVVGRWKDRD VLKRLEWTYD PERDRKLYGL DNEFDAESWD  900
SEIEGFSSGE DDKCLQKDDK NAWWELESNA GLTPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6qe3_A3e-13459531195263Putative transferase CAF17, mitochondrial
6qe4_A3e-13459531209277Putative transferase CAF17, mitochondrial
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA121251920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-142C2H2 family protein