PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn003161

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NF-YA

Protein Properties

Length: 245aa MW: 27392.9 Da PI: 10.5248

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn003161	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	95.1	7.9e-30	151	211	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk....pylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e e+k+ +ksrk pylheSRh hAl+R+Rg+gGrF Achn003161 151 EEPVFVNAKQYHGILRRRQSRAKAELENKM-IKSRKlnmqPYLHESRHLHALKRARGCGGRF 211 69*************************7.555543333*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	7.0E-33	149	214	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.044	150	214	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.0E-25	152	211	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	9.0E-22	153	175	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	155	175	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	9.0E-22	188	211	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MRQTKRKVNS RKGKQKQNRR QQFLLATENK AQIAQKRFAP EISLQDNSEA DEQQKHSDTQ 60 VQSSSPVTGT SHPATTTPSV QYMMPPQLGQ GNAMGQAAYP YPDPYYRSIF APAPYDAQPY 120 PVQPYPPQPM VHVQLMGIQQ AGVPLPSDAV EEPVFVNAKQ YHGILRRRQS RAKAELENKM 180 IKSRKLNMQP YLHESRHLHA LKRARGCGGR FTNSKKNENQ QKEAASGVKS QANKNDLAPS 240 ESSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-18	150	219	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010655736.1	1e-105	PREDICTED: nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	9e-61	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2R6QAL6	1e-146	A0A2R6QAL6_ACTCH; Nuclear transcription factor Y subunit A-7 like
STRING	VIT_10s0003g04650.t01	1e-104	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6650	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	4e-59	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]