PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn003761

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 346aa MW: 37836.9 Da PI: 8.6623

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn003761	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00028	120	142	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H Achn003761 120 YQCKTCDRTFSSFQALGGHRASH 142 9***********99999998887 PP
2	zf-C2H2	12.2	0.00056	188	210	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cg Fs+ L H+r+H Achn003761 188 HDCSICGAEFSSGQALGGHMRRH 210 56********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	3.6E-11	119	143	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.55E-8	119	142	No hit	No description
PROSITE profile	PS50157	11.219	120	147	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.034	120	142	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	122	142	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.55E-8	183	210	No hit	No description
Pfam	PF13912	6.6E-12	187	212	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.515	188	210	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.04	188	210	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	190	210	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MGDGPNTHAK IIIKRKRTQR QRPLSPIPIS IVPFPTRSSS GDGDGDNNIN AATTSSTSAE 60 SVVTDKEEDA ANFLILLSQG PPKVNGDDHE KIVSKFTSKR YLETPRMGGG GSGKAGTYVY 120 QCKTCDRTFS SFQALGGHRA SHTRPKLDNI NTDTGYNNDD EEQIRRQYMP PPLYLHGNNN 180 PKASSKVHDC SICGAEFSSG QALGGHMRRH RASIGATASF SSSPSPSPIG CDVVAPEAKK 240 ARIQLSLDLG LDLNLPAPED LICLQRSKEG FTSKQQEQQQ QQQQQQLPIG LGFTLKQQVQ 300 QPQQQQQQQS PIGLGFTSKQ QEQQSQQQQQ QQSRNTHQSL VDCHY*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MGDGPNTHAK IIIKRKRTQR QRPLSPIPIS IVPFPTRSSS GDGDGDNNIN AATTSSTSAE  60
SVVTDKEEDA ANFLILLSQG PPKVNGDDHE KIVSKFTSKR YLETPRMGGG GSGKAGTYVY  120
QCKTCDRTFS SFQALGGHRA SHTRPKLDNI NTDTGYNNDD EEQIRRQYMP PPLYLHGNNN  180
PKASSKVHDC SICGAEFSSG QALGGHMRRH RASIGATASF SSSPSPSPIG CDVVAPEAKK  240
ARIQLSLDLG LDLNLPAPED LICLQRSKEG FTSKQQEQQQ QQQQQQLPIG LGFTLKQQVQ  300
QPQQQQQQQS PIGLGFTSKQ QEQQSQQQQQ QQSRNTHQSL VDCHY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028068862.1	3e-64	zinc finger protein ZAT5
TrEMBL	A0A2R6QAZ0	0.0	A0A2R6QAZ0_ACTCH; Zinc finger protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4015	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-38	C2H2 family protein