PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn003861
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 630aa    MW: 72671.7 Da    PI: 8.8103
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn003861genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.3e-09423463346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WTteE e++ + ++++G + Wk  a t+g  + + ++k+ w+ 
       Achn003861 423 SWTTEELEIIRKHHEEHGAK-WKELADTLG--KNRVHLKDTWRR 463
                      7*******************.********9..789999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0016347418IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-7350437IPR009057Homeodomain-like
SMARTSM007170.039420467IPR001005SANT/Myb domain
SuperFamilySSF466896.21E-8422480IPR009057Homeodomain-like
PROSITE profilePS500906.853423465IPR017877Myb-like domain
PfamPF139212.5E-9424482No hitNo description
Gene3DG3DSA:1.10.10.605.1E-7438474IPR009057Homeodomain-like
PROSITE profilePS500907.828466534IPR017877Myb-like domain
SMARTSM007174.7470536IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-7475536IPR009057Homeodomain-like
SuperFamilySSF466892.26E-5514595IPR009057Homeodomain-like
PROSITE profilePS500906.922536589IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MGKDSKKERR SETNASKEAS DYAGIVSDRV GDGSEVNKEA KRKQKYKKKA EVSSDVDLDG  60
SRSEKDYEVA DENYQKEEKT KMKKRKLEAV GDNNNSNEEI HMGGEERSCL QTDDGKDLGN  120
ESALKARKEK KRYKEDRKKD ENDSVPYPMD ILEVKEMDKD KVVKKQRSSR KDNTSEMKCV  180
EEHIEKKKKK KKKGRKDQEI GDFKGKTETT AVEGVEEVRE NYSMDVSEKV VSEKVVKKRK  240
REKKKSKDDL GTGVREMMPE ELHNESTMVA NNGIGDNKDS THSTRKKKKN GSKGNSKKQN  300
SVETDFENPK PKVKSKKVRF SGEVEVFPSS DGPSKGKEKN QVEKLVQGKR FSPEEDEMVK  360
ESVFNYIEDH DLGEEGLHMV LHCRSYPKVK NCWKEIGAVL PHRPYTSIYY RAHSLFERGE  420
DRSWTTEELE IIRKHHEEHG AKWKELADTL GKNRVHLKDT WRRIKLPNKK KGHWSQEEYQ  480
GLFDLVNMDL SMKAFEEKKT KHGMLRDNIS WGAISDKLST RIDANCCEKW YSQLTSPMVA  540
EGDWANTDDY HLLIALFNLD ACCIEDVDWD NLLDHRSGDV CRKRWNQMVK HIGKHGTKSF  600
AEQVEILSKR YCPDILEARE AWDSKPAVS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127138KEKKRYKEDRKK
2186192KKKKKKK
3187195KKKKKKGRK
4233239KVVKKRK
5236243KKRKREKK
6239247KREKKKSKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028093246.10.0DNA-binding protein REB1-like
TrEMBLA0A2R6PY550.0A0A2R6PY55_ACTCH; Cyclin-D-binding Myb-like transcription factor
STRINGXP_006488047.11e-167(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10291429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-138MYB_related family protein