PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn005041
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 256aa    MW: 29061.1 Da    PI: 8.2247
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn005041genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012129144116
                 EEETTTTEEESSHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnL 16 
                 + C++C+k+F+r  n+
  Achn005041 129 FACSICSKTFNRYNNM 144
                 78********997765 PP
2zf-C2H216.32.8e-05178200123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C +Cgk F  k + ++H +++
  Achn005041 178 FTCRKCGKNFAVKGDWRTHEKNC 200
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.12129158IPR007087Zinc finger, C2H2
SuperFamilySSF576671.78E-6160198No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5164198IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.642178198IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MVTVLTPPPL VNFLQEIESS LTQREDNIVS ERIQCLPLLS RLIEAKPVKE EDDGVEKENG  60
FGIRGEKIEK VAVALHIGLP NNGESEAKPF KCNREEDDPS KEKVGHTFNT ESRFWIPTPV  120
QILIGPMQFA CSICSKTFNR YNNMQGCKNN INHPRAKPLK DFRTLQTHYK RKHGAKPFTC  180
RKCGKNFAVK GDWRTHEKNC GKMWFCTCGS DFKHKRSLKD HIRSFGKGHS PHPSLDGIED  240
EKECVTGSED EEMPH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028071029.11e-124zinc finger protein WIP3-like
SwissprotQ9SGD15e-83ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A2R6PQW31e-166A0A2R6PQW3_ACTCH; Zinc finger protein
STRINGEOY334691e-120(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.12e-85WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]