PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn005241
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 182aa    MW: 19925.9 Da    PI: 7.7954
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn005241genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.17.1e-39141241100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal...........peeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l+ +           p ++r da+ss+vyeA+ar+rdPvyG+vg i++lq+q++
  Achn005241  14 PCAACKLLRRRCAEDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQLVvivgrenvqelPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQHQID 112
                 7********************************************97555555544455589999********************************** PP

      DUF260  89 qlkaelallkee 100
                  l+++la++++e
  Achn005241 113 VLQTQLAMAQAE 124
                 *******99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.28313125IPR004883Lateral organ boundaries, LOB
PfamPF031955.1E-4014122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MKEINGRKQG VASPCAACKL LRRRCAEDCV FAPYFPADEP QKFASVHKVF GASNVNKMLQ  60
LVVIVGRENV QELPVHQRGD AVSSMVYEAN ARVRDPVYGC VGAISSLQHQ IDVLQTQLAM  120
AQAEVVQLRM RQFSTMSNRP TTTKSPENGS PPPLPISPTK SSFNMDMVVD EASIEESLWS  180
C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-46101277113LOB family transfactor Ramosa2.1
5ly0_B3e-46101277113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364248.14e-92PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE92e-69LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A2R6PR841e-121A0A2R6PR84_ACTCH; LOB domain-containing protein
STRINGPGSC0003DMT4000222861e-91(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.18e-72LOB domain-containing protein 4