PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn005631

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

WRKY

Protein Properties

Length: 151aa MW: 16802 Da PI: 9.2028

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn005631	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	38.1	3.2e-12	111	134	1	24
---SS-EEEEEEE--TT-SS-EEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsY 24 ldDgy+WrKYGqK vk+s +pr + Achn005631 111 LDDGYRWRKYGQKAVKNSSHPRRF 134 59********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-12	99	134	IPR003657	WRKY domain
SuperFamily	SSF118290	4.58E-10	103	134	IPR003657	WRKY domain
PROSITE profile	PS50811	12.909	106	134	IPR003657	WRKY domain
SMART	SM00774	2.0E-4	111	148	IPR003657	WRKY domain
Pfam	PF03106	5.7E-8	112	133	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MGEELPPNTN TNNNVPYLFT PSLPSTPLLN LPLEPQIDHL DIDWASLLSG TFLNGDHQNL 60 QLPNVPSVSS TRINTVEGDN CQKSTKGKGS RSKKAIPARV AFHTRSSEDV LDDGYRWRKY 120 GQKAVKNSSH PRRFVVFCTL FVFIFQVFGN *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028115574.1	3e-42	probable WRKY transcription factor 43
TrEMBL	A0A2R6QJ15	3e-82	A0A2R6QJ15_ACTCH; WRKY transcription factor
STRING	XP_010053205.1	6e-27	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6374	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	4e-17	WRKY DNA-binding protein 56