PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn006961

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

HB-other

Protein Properties

Length: 134aa MW: 15428.4 Da PI: 9.1904

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn006961	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	25	83	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k t++t+eq+e+Le++F+++++p+ ++r+e+ ++ +L+ +q+k+WFqNrR +ek+ Achn006961 25 KYTRYTAEQVEVLEKVFAECPKPNFSDRQEMIHNYsilsNLEPKQIKIWFQNRRCREKQ 83 679***************************999999*****************97 PP
2	bZIP_1	26.7	1.2e-08	77	122	18	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 rr+R++ k+e +L+ k+L+a Nk Lk+e+++l+k+v+ l e+ Achn006961 77 RRCREKQKKEANNLQSVNKKLTAANKLLKEENDRLQKQVSHLVYEN 122 9**************************************9886655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.8E-17	15	85	IPR009057	Homeodomain-like
SMART	SM00389	3.2E-15	22	88	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-19	24	83	IPR009057	Homeodomain-like
CDD	cd00086	2.26E-15	25	85	No hit	No description
PROSITE profile	PS50071	15.71	25	84	IPR001356	Homeobox domain
Pfam	PF00046	3.4E-16	25	83	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	59	82	IPR017970	Homeobox, conserved site
CDD	cd14686	4.26E-5	77	116	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.5E-5	84	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MGCSHGGRGS KRGNGSGDPD GDCGKYTRYT AEQVEVLEKV FAECPKPNFS DRQEMIHNYS 60 ILSNLEPKQI KIWFQNRRCR EKQKKEANNL QSVNKKLTAA NKLLKEENDR LQKQVSHLVY 120 ENEYIRQQLE NIL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028126794.1	7e-66	homeobox-leucine zipper protein HOX32-like isoform X1
Refseq	XP_028126795.1	7e-66	homeobox-leucine zipper protein HOX32-like isoform X1
Refseq	XP_028126796.1	7e-66	homeobox-leucine zipper protein HOX32-like isoform X1
Swissprot	A2XK30	1e-53	HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
Swissprot	Q6AST1	1e-53	HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBL	A0A2R6RTN6	3e-93	A0A2R6RTN6_ACTCH; Homeobox-leucine zipper protein
STRING	Pavir.Ia01087.1.p	2e-53	(Panicum virgatum)
STRING	Si034228m	2e-53	(Setaria italica)
STRING	Sb01g013710.1	2e-53	(Sorghum bicolor)
STRING	GRMZM2G023291_P01	9e-56	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32880.1	2e-44	homeobox gene 8

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Itoh J,Hibara K,Sato Y,Nagato Y Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice. Plant Physiol., 2008. 147(4): p. 1960-75 [PMID:18567825] Li YY, et al. Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice. Rice (N Y), 2016. 9(1): p. 46 [PMID:27624698]