PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn007681
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 459aa    MW: 49920.8 Da    PI: 6.7847
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn007681genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.7e-1668113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd +l ++v  +G ++W++Iar +  gR++k+c++rw + 
       Achn007681  68 KGPWSPEEDAILSRLVSNFGARNWSLIARGIA-GRSGKSCRLRWCNQ 113
                      79******************************.***********985 PP
2Myb_DNA-binding52.21.4e-16152191647
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       eEd l+v+a++ +G++ W++Iar ++ gRt++ +k++w++ 
       Achn007681 152 DEEDRLIVQAHTIHGNK-WASIARLLP-GRTDNAIKNHWNST 191
                      59***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.28665118IPR017930Myb domain
SuperFamilySSF466899.9E-2666116IPR009057Homeodomain-like
SMARTSM007174.4E-1467116IPR001005SANT/Myb domain
PfamPF002492.4E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-2269124IPR009057Homeodomain-like
CDDcd001675.63E-1370112No hitNo description
SMARTSM007171.1E-11146194IPR001005SANT/Myb domain
PROSITE profilePS5129418.918146196IPR017930Myb domain
SuperFamilySSF466899.9E-26149188IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-18152193IPR009057Homeodomain-like
CDDcd001675.06E-11152192No hitNo description
PfamPF002494.4E-13153191IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MATDTEMDDL TVVVVEESTA ADDGTDAGEG GDGEGQNEDV DVVVVGEGSG SSGGGKGRVG  60
RKYGDRVKGP WSPEEDAILS RLVSNFGARN WSLIARGIAG RSGKSCRLRW CNQLDPAVKR  120
KPFTGKIIFL RSRSNLSLDL HTLHCASEIV ADEEDRLIVQ AHTIHGNKWA SIARLLPGRT  180
DNAIKNHWNS TLRRRCIGRG KLKLESSNAV EDISIDRSKA SSEETLSCGD VNSFKSLEGK  240
DVSSRESLEE QFEDKAQPQG QSSDKAKEPP TLFRPVARVS AFNVFNPSNG PETVSAFPRP  300
IPRQRPSVQD SPEAEIYKLL EGAYGERLIP HQCGHCCCET ESKGKPRRSL LGPEFVDYAE  360
PPFFPSHELA AIATDISNIA WQKSGLESSS VRAVEKVNVR IGSGGPLVQM DHFEENRKKG  420
RLRFEEGKNK LMGMVTDVQS TSTGRQTSSV SAKVGGWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-33651954107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593773e-41KF059377.1 Salvia miltiorrhiza MYB-related transcription factor (MYB23) mRNA, complete cds.
GenBankKF0594873e-41KF059487.1 Salvia miltiorrhiza MYB-related transcription factor (MYB23) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028078722.10.0transcription factor MYB1-like
TrEMBLA0A2R6RRK70.0A0A2R6RRK7_ACTCH; Transcription factor like
STRINGVIT_08s0007g01540.t011e-178(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.18e-97myb domain protein 1