PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn008041

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 95aa MW: 10957.8 Da PI: 10.7852

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn008041	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.9	4.7e-05	38	77	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rR +++ +++ L++l+ + +K + a++L++A Ik Lq Achn008041 38 RRSQKLSDRITALQKLVSPY-----GKTDTASVLQEALVSIKALQ 77 7999************99.....9**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.705	27	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-7	38	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.05E-8	38	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MREQTKSKKK AAYFQEQWHS QVKEDLSKMI QRQRVPVRRS QKLSDRITAL QKLVSPYGKT 60 DTASVLQEAL VSIKALQDQI QVTHPNHLKL VIYI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024042127.1	2e-24	transcription factor bHLH133-like isoform X1
Refseq	XP_024042129.1	1e-24	transcription factor bHLH133-like isoform X3
Refseq	XP_024957129.1	2e-24	transcription factor bHLH133-like isoform X1
Refseq	XP_024957131.1	1e-24	transcription factor bHLH133-like isoform X4
TrEMBL	A0A2H5NYP8	9e-23	A0A2H5NYP8_CITUN; Uncharacterized protein (Fragment)
TrEMBL	A0A3S3MBN5	8e-23	A0A3S3MBN5_9MAGN; Transcription factor bHLH123 isoform X1
STRING	XP_006486499.1	9e-24	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15444	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05170.1	3e-15	bHLH family protein