PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn008351
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 183aa    MW: 20333 Da    PI: 7.5025
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn008351genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.66.6e-4125120499
      DUF260   4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 aCk+lrrkC ++C++apyfp e+p+kf  vhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+++l++el+++++
  Achn008351  25 ACKFLRRKCLPGCIFAPYFPPEEPQKFVSVHKIFGASNVSKLLNEIMPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVMRLQKELDATNA 120
                 9******************************************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.12321122IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-4025119IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSDTHLLRPT CRHVGAEQVH KLNFACKFLR RKCLPGCIFA PYFPPEEPQK FVSVHKIFGA  60
SNVSKLLNEI MPHQREDAVN SLAYEAEARM KDPVYGCVGA ISVLQRQVMR LQKELDATNA  120
DLMRFTNNDM PNSSFSMFPG QYGARIGQGA FDHNSGFFLP YASQWNNNHS GCSSEEGGDG  180
TI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-612513014119LOB family transfactor Ramosa2.1
5ly0_B2e-612513014119LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028118700.12e-83LOB domain-containing protein 25-like
RefseqXP_028118701.12e-83LOB domain-containing protein 25-like
SwissprotQ9FML43e-60LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A2R6RTM51e-116A0A2R6RTM5_ACTCH; Protein LATERAL ORGAN BOUNDARIES like
STRINGVIT_14s0066g00680.t014e-77(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.41e-62LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]