PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn009891
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 536aa    MW: 61285.4 Da    PI: 6.8014
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn009891genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.83.2e-14100173286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 W+ +evlaL+++r++me++l +       We+vs+k+re g++rs ++Ck k+e+ ++    i+++  k+      ++++f++le
  Achn009891 100 WSSDEVLALLRIRSSMENWLPDF-----TWEHVSRKLRELGYRRSGETCKAKFEEESRHLNTIATTYTKN------NYRFFSELE 173
                 ********************988.....9**************************999988888888873......678888887 PP
2trihelix94.41.1e-29401491186
    trihelix   1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW+++evlaLi++r +++ + +  +      +k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s++s+tcpyf+ql 
  Achn009891 401 RWPRDEVLALINLRCSLNISTSGPNeekelgAKGPLWERISQGMLEMGYKRSAKRCKEKWENINKYFRKTKDVNKKR-STNSRTCPYFHQLS 491
                 8**************88877763222345669********************************************8.78889*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-999174No hitNo description
PROSITE profilePS500906.15699151IPR017877Myb-like domain
PfamPF138378.1E-19400491No hitNo description
CDDcd122039.04E-23400471No hitNo description
PROSITE profilePS500906.644401464IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MFDGVPAEQF HQFIASSRTS VHPLPLSFPL HGSTMQTFPS FDPFPSSHHL PLQLQPHLLP  60
QLHHPPTTGK QEEEREVNSL ISTSLELERE RSVPGPIYPW SSDEVLALLR IRSSMENWLP  120
DFTWEHVSRK LRELGYRRSG ETCKAKFEEE SRHLNTIATT YTKNNYRFFS ELEEVCHGEN  180
SQVLAEKNQN AENLSNDEVD KVGKQIGLEK EGSRNETVKE TTTQKSKKRK HGQRFEMLKG  240
FCQEILSNMM AQQEEMHNKI IEDMVKRDEE KIEREEAWKK QETERINKEI EVRAREQAIS  300
GDRQTKLIEY LKHFTSNPSE KQSLGLRNDN ENSVDASKGS VSSPSPSLIQ LQNPNPIRHP  360
SNQNPSSLAT SPTENPSSSH TQKAPQNPNV AKNEREDIGK RWPRDEVLAL INLRCSLNIS  420
TSGPNEEKEL GAKGPLWERI SQGMLEMGYK RSAKRCKEKW ENINKYFRKT KDVNKKRSTN  480
SRTCPYFHQL STLYNQGALV GPLDGPENSS APPENRLENA DAEVVEVHPA LDFEF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028091610.10.0trihelix transcription factor GTL2
TrEMBLA0A2R6RBE90.0A0A2R6RBE9_ACTCH; Trihelix transcription factor
STRINGVIT_14s0030g01860.t011e-172(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137001013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.12e-98Trihelix family protein