PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn010701
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 126aa    MW: 13663.5 Da    PI: 8.4918
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn010701genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY54.42.4e-175442059
                S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY 20 fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                ++r+YYrCtsagCpv+k++er+ +++++++itY+g H+h+
  Achn010701  5 VTRNYYRCTSAGCPVRKHIERAVDNTSALIITYKGIHDHD 44
                68*************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007744.3E-8445IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-15546IPR003657WRKY domain
SuperFamilySSF1182903.92E-14546IPR003657WRKY domain
PfamPF031061.3E-11543IPR003657WRKY domain
PROSITE profilePS5081118.464746IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MVPNVTRNYY RCTSAGCPVR KHIERAVDNT SALIITYKGI HDHDMPVPKK RHGPPSAPLV  60
AAAAPVSMNN SQLKKTKANQ ERVSATQWSV DTEGEITSEA VEAGEEKAME SARTLLSIGF  120
EIKQC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-147463574WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154886.12e-62hypothetical protein PHAVU_003G156300g
SwissprotP595832e-47WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A2R6QHL72e-79A0A2R6QHL7_ACTCH; WRKY transcription factor
STRINGXP_007154886.18e-62(Phaseolus vulgaris)
STRINGPGSC0003DMT4000290691e-62(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91892127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-40WRKY DNA-binding protein 32