PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn011651
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 612aa    MW: 67490.2 Da    PI: 7.0195
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn011651genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.27.6e-1112446113374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 + L+e+A+a+ +g++e a+++L+rl++l + +g++ qRl+ay++ AL++r++     + +  p+ e     s+e++ +++l+++ sP++k+++++aN a
  Achn011651 244 QSLIEAATAICEGKTEVASEILTRLNQLGNIRGTAEQRLTAYMVYALRSRMYP----MEHPPPVAEL---YSKEHAISTQLLYKFSPCFKLGFMAANLA 335
                 78**************************************************9....4444444444...49999************************ PP

        GRAS 102 Ileavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 Ilea++ +   ++H++Dfdi+qG Q++ L++aLa+R+ ++ psl+iT++ +  +g +e+l+ +g+ L+  A+e+g++f+fnv ++ +++dl+le+L v+
  Achn011651 336 ILEATSDQrpCKLHVVDFDIGQGCQYVHLIHALAARKaDNFPSLKITTFTDFVNGGEEKLKLVGDELKTRANEVGIRFNFNV-LSLKTTDLSLERLGVE 433
                 *******977789*********************9997889**********9999***************************.58899*********** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 ++E+laVn++++l++++desv++e+ rde+L+ v++lsP vv+vveqe++ n+++F++r++e++ yy alfdsl+a++ r++ er+ +E+  l+r++ n
  Achn011651 434 ENEVLAVNFAFRLYKVPDESVTTENLRDELLRRVRGLSPAVVTVVEQEMNANTAPFMARVTETCGYYGALFDSLDATVLRDNPERVRIEEG-LSRKAAN 531
                 *******************************************************************************************.******* PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  vaceg++r+er+e ++kWr+r+++aGF+p pls  + ++ ++ll+     + g++v+ee g +++gW++r+L+++SaWr
  Achn011651 532 SVACEGRDRIERCEVFGKWRARMGMAGFNPKPLSPLVSDSLRTLLNSGTcgNPGFTVKEETGRVCFGWMGRTLTVTSAWR 611
                 *********************************************86444499**************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.052216589IPR005202Transcription factor GRAS
PfamPF035142.6E-108244611IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MSSGFSGDFF TAGGFTGRST AMNNPQSLYN LADPASRIHH RRPDLIGKRS LAEFQTQHQL  60
FQQQQALGLY LRNVKPRTNQ NPSPICPLSA DFSASVSPDI SSISSTSVSS SPAISTRYGR  120
PILQQQQIRP QPINFGNGGS AIPFNHPNFS GVSYPNLLPS RGVNRETGEE SEKKMMNRLH  180
ELEKQLFDDN EEEEEDAISV VTNSEWSETI QNLIGSTQKP ISPTSSSSSC SSSSASPQTL  240
SPKQSLIEAA TAICEGKTEV ASEILTRLNQ LGNIRGTAEQ RLTAYMVYAL RSRMYPMEHP  300
PPVAELYSKE HAISTQLLYK FSPCFKLGFM AANLAILEAT SDQRPCKLHV VDFDIGQGCQ  360
YVHLIHALAA RKADNFPSLK ITTFTDFVNG GEEKLKLVGD ELKTRANEVG IRFNFNVLSL  420
KTTDLSLERL GVEENEVLAV NFAFRLYKVP DESVTTENLR DELLRRVRGL SPAVVTVVEQ  480
EMNANTAPFM ARVTETCGYY GALFDSLDAT VLRDNPERVR IEEGLSRKAA NSVACEGRDR  540
IERCEVFGKW RARMGMAGFN PKPLSPLVSD SLRTLLNSGT CGNPGFTVKE ETGRVCFGWM  600
GRTLTVTSAW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-402446116375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028124665.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-155SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A2R6Q9100.0A0A2R6Q910_ACTCH; Scarecrow-like protein
STRINGPGSC0003DMT4000262400.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-144SCARECROW-like 8