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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Achn011651 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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| Family | GRAS | ||||||||
| Protein Properties | Length: 612aa MW: 67490.2 Da PI: 7.0195 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 362.2 | 7.6e-111 | 244 | 611 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
+ L+e+A+a+ +g++e a+++L+rl++l + +g++ qRl+ay++ AL++r++ + + p+ e s+e++ +++l+++ sP++k+++++aN a
Achn011651 244 QSLIEAATAICEGKTEVASEILTRLNQLGNIRGTAEQRLTAYMVYALRSRMYP----MEHPPPVAEL---YSKEHAISTQLLYKFSPCFKLGFMAANLA 335
78**************************************************9....4444444444...49999************************ PP
GRAS 102 Ileavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
Ilea++ + ++H++Dfdi+qG Q++ L++aLa+R+ ++ psl+iT++ + +g +e+l+ +g+ L+ A+e+g++f+fnv ++ +++dl+le+L v+
Achn011651 336 ILEATSDQrpCKLHVVDFDIGQGCQYVHLIHALAARKaDNFPSLKITTFTDFVNGGEEKLKLVGDELKTRANEVGIRFNFNV-LSLKTTDLSLERLGVE 433
*******977789*********************9997889**********9999***************************.58899*********** PP
GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
++E+laVn++++l++++desv++e+ rde+L+ v++lsP vv+vveqe++ n+++F++r++e++ yy alfdsl+a++ r++ er+ +E+ l+r++ n
Achn011651 434 ENEVLAVNFAFRLYKVPDESVTTENLRDELLRRVRGLSPAVVTVVEQEMNANTAPFMARVTETCGYYGALFDSLDATVLRDNPERVRIEEG-LSRKAAN 531
*******************************************************************************************.******* PP
GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
vaceg++r+er+e ++kWr+r+++aGF+p pls + ++ ++ll+ + g++v+ee g +++gW++r+L+++SaWr
Achn011651 532 SVACEGRDRIERCEVFGKWRARMGMAGFNPKPLSPLVSDSLRTLLNSGTcgNPGFTVKEETGRVCFGWMGRTLTVTSAWR 611
*********************************************86444499**************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 50.052 | 216 | 589 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 2.6E-108 | 244 | 611 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 612 aa Download sequence Send to blast |
MSSGFSGDFF TAGGFTGRST AMNNPQSLYN LADPASRIHH RRPDLIGKRS LAEFQTQHQL 60 FQQQQALGLY LRNVKPRTNQ NPSPICPLSA DFSASVSPDI SSISSTSVSS SPAISTRYGR 120 PILQQQQIRP QPINFGNGGS AIPFNHPNFS GVSYPNLLPS RGVNRETGEE SEKKMMNRLH 180 ELEKQLFDDN EEEEEDAISV VTNSEWSETI QNLIGSTQKP ISPTSSSSSC SSSSASPQTL 240 SPKQSLIEAA TAICEGKTEV ASEILTRLNQ LGNIRGTAEQ RLTAYMVYAL RSRMYPMEHP 300 PPVAELYSKE HAISTQLLYK FSPCFKLGFM AANLAILEAT SDQRPCKLHV VDFDIGQGCQ 360 YVHLIHALAA RKADNFPSLK ITTFTDFVNG GEEKLKLVGD ELKTRANEVG IRFNFNVLSL 420 KTTDLSLERL GVEENEVLAV NFAFRLYKVP DESVTTENLR DELLRRVRGL SPAVVTVVEQ 480 EMNANTAPFM ARVTETCGYY GALFDSLDAT VLRDNPERVR IEEGLSRKAA NSVACEGRDR 540 IERCEVFGKW RARMGMAGFN PKPLSPLVSD SLRTLLNSGT CGNPGFTVKE ETGRVCFGWM 600 GRTLTVTSAW R* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5hyz_A | 1e-40 | 244 | 611 | 6 | 375 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_028124665.1 | 0.0 | scarecrow-like protein 8 | ||||
| Swissprot | Q9FYR7 | 1e-155 | SCL8_ARATH; Scarecrow-like protein 8 | ||||
| TrEMBL | A0A2R6Q910 | 0.0 | A0A2R6Q910_ACTCH; Scarecrow-like protein | ||||
| STRING | PGSC0003DMT400026240 | 0.0 | (Solanum tuberosum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA4023 | 24 | 43 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G52510.1 | 1e-144 | SCARECROW-like 8 | ||||




