PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn011781
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 310aa    MW: 34419.5 Da    PI: 4.8785
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn011781genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12e-29135193259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ve+s  dp++ ++ Y+g+H+h+
  Achn011781 135 ADSWAWRKYGQKPIKGSPYPRNYYRCSTSkGCAARKQVEKSPADPNIYVVSYTGDHTHP 193
                 79************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-31120195IPR003657WRKY domain
SuperFamilySSF1182905.23E-26128195IPR003657WRKY domain
PROSITE profilePS5081132.237129195IPR003657WRKY domain
SMARTSM007742.4E-35134194IPR003657WRKY domain
PfamPF031061.2E-24136193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MADGWDLHAV VTGVGAGDDG TNTVEDPSHD FSSLTFNNDD SQIYYPDFFE NTDFQFQGLE  60
EIYQGLNSPP PPIHQQQTQP PPPPQQQMIH TQIMNSRAGS SLSFPAFHSQ TVRSRRRKNQ  120
QTKLVREMSH EELLADSWAW RKYGQKPIKG SPYPRNYYRC STSKGCAARK QVEKSPADPN  180
IYVVSYTGDH THPRPTHRNS LAGRTRNKFS NSTPKPTSGD SSAATKLSGD SSSPVSASSF  240
SPTTMEGESA THVNVEVKDD DDVAEMEEDG EDYDDEDLLI PNMVMSEDIL KGFEELRGRF  300
SGSNASDFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-18125195877Probable WRKY transcription factor 4
2lex_A1e-18125195877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028107295.11e-73probable WRKY transcription factor 27
TrEMBLA0A2R6Q9320.0A0A2R6Q932_ACTCH; WRKY transcription factor
STRINGMigut.F00276.1.p3e-67(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138601014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.16e-51WRKY DNA-binding protein 27