PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn012651
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 105aa    MW: 12403.1 Da    PI: 10.2247
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn012651genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.31.4e-0911104176
        FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkek.dgkw 76 
                 k+Y++Y+++  F +r ++s+k  +r++ +t+  fvC kegk  ++++k                 +k++r+ ++ + g +a+l++k++k + kw
  Achn012651  11 KYYEDYGRQNDFWIRSRTSSKGqNRSNDVTSVLFVCAKEGKYIPKTEKdgvegndervkddkvlPKKRKRSCSTAKFGYNAHLRIKRDKwSLKW 104
                 69*************9888776477888*************999999999***********99888889999999***********99766666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-611103IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MFFEIIEEAR KYYEDYGRQN DFWIRSRTSS KGQNRSNDVT SVLFVCAKEG KYIPKTEKDG  60
VEGNDERVKD DKVLPKKRKR SCSTAKFGYN AHLRIKRDKW SLKW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17580KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289266.15e-29PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2R6R5G69e-71A0A2R6R5G6_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGXP_004289266.12e-28(Fragaria vesca)